Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate S1-2 coat protein (CP) mRNA, partial cds.

ACC No: AY997693

Dated: 2007-10-16 | Length: 1628 | CRC: -1393275410

                ID   AY997693; SV 1; linear; mRNA; STD; VRL; 1628 BP.
XX
AC   AY997693;
XX
DT   01-MAY-2006 (Rel. 87, Created)
DT   16-OCT-2007 (Rel. 93, Last updated, Version 3)
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DE   Grapevine fanleaf virus isolate S1-2 coat protein (CP) mRNA, partial cds.
XX
KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1628
RX   DOI; 10.1016/j.virusres.2007.04.013.
RX   PUBMED; 17521761.
RA   Sokhandan Bashir N., Nourinejad Zarghani S., Saeid Hejazi M.;
RT   "Diversity of Grapevine fanleaf virus isolates from Iran";
RL   Virus Res. 128(1-2):144-148(2007).
XX
RN   [2]
RP   1-1628
RA   Sokhandan Bashir N., Nourinejad S.;
RT   ;
RL   Submitted (03-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Plant Protection, University of Tabriz, 29 Bahman Blvd., Tabriz, E. Az.
RL   51664, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1628
FT                   /organism="Grapevine fanleaf virus"
FT                   /isolate="S1-2"
FT                   /ecotype="Shiramin"
FT                   /mol_type="mRNA"
FT                   /country="Iran"
FT                   /clone="2"
FT                   /db_xref="taxon:12274"
FT   gene            <1. .1628
FT                   /gene="CP"
FT   CDS             <1. .1481
FT                   /codon_start=3
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /db_xref="GOA:Q1LZW2"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="UniProtKB/TrEMBL:Q1LZW2"
FT                   /protein_id="AAY44373.1"
FT                   /translation="DCQANRYLGTLNIRDMITDFKGVQYEKWITAGLVMPIFKIVIRLP
FT                   ANAFTGLTWVMSFDAYNRITSRITTSADPVYTLSVPHWLIHHKLGTFSCEVDYGELCGH
FT                   AMWFKSTTFESPRLHFTCLTGNNKELAADWQAVVELYAELEETTSFLGKPTLVFDPGVF
FT                   DGKFKFLTCPPIFFDLTAITALKSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTIK
FT                   GKVHICAPIFYSIVLWVVSEWNGTTMDWNELFKYPGVYVEADGSFEVKIRSPYHRTPAR
FT                   LLAGQSQRDMSSLNFYAIAGPIAPSGETARLPIVVQIEEIVRPDLSLPSFEDDYFVWVD
FT                   FSEFTLDKEEIEIGSRFFDFTSSTCRVSMGENPFAAMIACHGLHSGILDLKFQWSLNTE
FT                   FGKSNGSVTITRLVGDKALGLDGPSQVFALQRLEGTAELLIGNFAGANPNSHFSLYSRW
FT                   MAIKLDQAKSMKVLRVLCKPRPGFSFYGRTSFPV"
XX
SQ   Sequence 1628 BP; 416 A; 300 C; 394 G; 518 T; 0 other;

ay997693 Length: 1628  16-OCT-2007  Type: N  Check: 2352  ..

       1  aggattgcca ggcaaatagg tacttgggca ccctgaatat acgtgatatg
      51  attacagatt ttaagggtgt tcagtatgag aagtggataa ctgcaggtct
     101  agtcatgccc atttttaaaa ttgtcatcag gctacctgca aatgccttta
     151  ctgggttgac atgggtgatg agttttgacg cttacaaccg gataactagt
     201  aggattacta ctagcgctga tcctgtatat accctgtctg ttcctcattg
     251  gcttattcac cataagttgg gcacgttttc atgtgaagtt gactacggag
     301  aattgtgcgg acacgctatg tggtttaaat ctaccacatt tgaatctccg
     351  aggttgcatt tcacctgtct aacgggcaac aacaaagagc tagcggcaga
     401  ctggcaagct gtcgtagaac tttatgccga gcttgaagag accacgtcgt
     451  ttctcgggaa acccacgttg gtatttgatc caggggtttt cgatggtaaa
     501  ttcaagtttt taacttgccc tcccattttc tttgatctaa cggccatcac
     551  agctctaaag agtgctgggc tgacattggg acaagttcca atggttggca
     601  ccacgaaggt ttacaatttg aatagcactc ttgtgagttg cgttttgggt
     651  atgggaggta ctattaaggg aaaggtacac atatgtgcac cgatctttta
     701  tagtattgtt ttgtgggtcg ttagtgagtg gaacgggacc actatggatt
     751  ggaatgaatt atttaaatat cccggggtgt atgtggaagc tgacgggagc
     801  tttgaagtta aaatccgctc tccatatcac cgaacacctg ctagattgct
     851  tgctggacag agccagaggg atatgagttc tctcaacttt tatgcaatag
     901  cagggcctat agctccttcg ggtgaaaccg cacgacttcc aatcgttgtg
     951  caaatagaag aaattgtgcg ccctgattta tccttgccaa gttttgaaga
    1001  tgattacttt gtatgggtag atttttctga atttacacta gacaaggagg
    1051  aaatcgagat tggatctcga ttctttgatt tcacttcaag cacttgtagg
    1101  gtatcgatgg gagaaaaccc ttttgctgcg atgattgctt gccatggatt
    1151  gcatagtggt atattagacc ttaaatttca atggagtcta aatactgaat
    1201  ttggcaagag caatgggagc gttactatca cgaggctggt tggcgacaaa
    1251  gccttgggct tggatggacc atcacaagtt tttgctctcc aaaggttaga
    1301  gggaactgca gagttgctga ttgggaattt tgcaggtgca aatccaaatt
    1351  cacatttctc tctctatagc cgatggatgg caattaaact ggaccaagca
    1401  aagagtatga aggtactccg agttttgtgt aaaccacgtc caggcttcag
    1451  cttttatggt agaaccagct ttccagtcta gggtatctga ctttaaaaga
    1501  cccatgtata tttagtattt tgtatgtgct agtttcattt atttgtgtta
    1551  ttgtttgttt taactagtct tttcaccgct tttgtgtgtt taatttcatg
    1601  cttttagtgg cgacagtgtg ttgtttgt