Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus gene for large ORF, complete cds, RNA2.
ACC No: D00355
Dated: 2003-07-07 | Length: 3050 | CRC: 612260803
!!NA_SEQUENCE 1.0
ID CUCMVRN2 standard; RNA; VRL; 3050 BP.
XX
AC D00355;
XX
SV D00355.1
XX
DT 11-APR-1990 (Rel. 23, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 5)
XX
DE Cucumber mosaic virus gene for large ORF, complete cds, RNA2.
XX
KW RNA2.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-3050
RX MEDLINE; 88299943.
RX PUBMED; 3404113.
RA Rizzo T.M., Palukaitis P.;
RT "Nucleotide sequence and evolutionary relationships of cucumber mosaic
RT virus (CMV) strains: CMV RNA2";
RL J. Gen. Virol. 69:1777-1787(1988).
XX
DR GOA; P16490.
DR SWISS-PROT; P16490; V2A_CMVFN.
XX
CC Submitted in computer readable form by Thomas,R. on 30/JAN/1989.
CC The nucleotide sequence of RNA 2 of the Fny strain (Subgroup I) of
CC cucumber mosaic virus (CMV) was determind and compared at both the
CC nucleic acid and protein level with the previously determined
CC corresponding sequence of RNA 2 of the Q strain (Subgroup 2) of
CC CMV. Fny-CMVRNAII2 consisted of 3050 nucleotides and contained a
CC single open reading frame (ORF) of 2571 nucleoties, whereas
CC Q-CMVRNA 2 consists of 3035 nucleotides and contains a single ORF
CC of 2517 nucleotides. At the nucleotide level, there was 71%
CC sequence homology between the two RNAs, while at the protein level
CC sequence homology was 73%. Protein homology was greater (89%) in
CC the central third than in either the N-terminal (64%) or the
CC C-terminal (56%) thirds. The secondary structures of the 3' end of
CC the RNAs were very similar, even though the nucleotide sequence
CC homology between the 3'-terminal 180 nucleotides was only 62%. By
CC contrast, there was 80% sequence homology between the 5'-terminal
CC 86 residue, non-translated regions of the two RNAs.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3050
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /note="5' end of RNA 2"
FT /organism="Cucumber mosaic virus"
FT /strain="Fny"
FT /segment="2"
FT CDS 87. .2660
FT /codon_start=1
FT /db_xref="GOA:P16490"
FT /db_xref="SWISS-PROT:P16490"
FT /product="large ORF"
FT /protein_id="BAA00263.1"
FT /translation="MAFPAPAFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR
FT PLPAVDVSESVTEDAHSLRTPDGAPAEAVSDEFVTYGAEDYLEKSDDELLVAFETMVKP
FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEEC
FT EADDAQIDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER
FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPDLNRATDRVDIN
FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN
FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN
FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP
FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID
FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT
FT GDALTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLFNMEA
FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD
FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC
FT ELINSFCSTEFRVERVNSNKQRKNYGIERRCNDKRRTPTGSYGGGEEAETKVSQTESTG
FT TRSQKSQRESAFKSQTIPLPTVLSSGWFGTDRVMPPCERGGVTRV"
XX
SQ Sequence 3050 BP; 770 A; 686 C; 706 G; 888 T; 0 other;
D00355 Length: 3050 July 15, 2003 09:22 Type: N Check: 3173 ..
1 gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc
51 cctagactta aatcttttct ttctagtatc ttttctatgg ctttccctgc
101 ccccgcattc tcactagcca atcttttgaa cggcagttac ggtgtcgaca
151 ctcccgagga tgtggaacgt ttgcgatctg agcaacgcga agaggctgct
201 gcggcctgtc gtaattacag gcccctaccc gctgtggatg tcagcgagag
251 tgtcacagag gacgcgcatt ccctccgaac tcctgacgga gctcccgctg
301 aagcggtgtc tgatgagttt gtaacttatg gtgctgaaga ttaccttgaa
351 aaatctgatg atgagctcct tgtcgctttt gagacgatgg tcaaacccat
401 gcgtatcgga caactatggt gccctgcgtt taataaatgt tcttttattt
451 ccagcattgc tatggccaga gctttgttgt tggcacctag aacatcccac
501 cgaaccatga agtgttttga agacctggtc gcggctattt acactaaatc
551 tgatttctac tacagtgaag agtgtgaagc cgacgacgct cagatagata
601 tctcgtctcg cgatgtaccc ggttattctt tcgaaccgtg gtcccgaacg
651 tctggatttg aaccgccgcc catttgtgaa gcgtgcgaca tgatcatgta
701 ccagtgcccg tgttttgatt ttaatgcttt aaagaaatcg tgcgctgaga
751 ggaccttcgc tgatgattat gttattgaag gtttagatgg tgttgttgat
801 aatgcgactc tgttgtcgaa tttgggtcca tttttggtac ccgtgaagtg
851 tcaatatgaa aaatgtccaa cgccaaccat cgcgattcct ccggatttaa
901 accgtgctac tgatcgtgtt gatatcaatt tagttcaatc catttgtgac
951 tcgactctgc ccactcatag taattacgac gactcttttc atcaagtgtt
1001 cgtcgaaagt gcagactatt ctatagatct ggatcatgtt agacttcgac
1051 agtctgatct tattgcaaaa attccagatt cagggcatat gataccggtt
1101 ctgaacaccg ggagcggtca caagagagta ggtacaacga aggaggtcct
1151 tacagcaatt aagaaacgta atgctgacgt tccagagcta ggtgattccg
1201 ttaatttgtc tagattgagt aaagctgtgg ctgagagatt cttcatttca
1251 tacatcaatg gtaactctct agcatccagt aactttgtca atgtcgttag
1301 taacttccac gattacatgg aaaaatggaa gtcctcaggt ctttcttatg
1351 atgatcttcc ggatcttcat gctgagaatt tgcagtttta tgaccacatg
1401 ataaaatccg atgtgaaacc tgtggtgagc gacacactca atatcgacag
1451 accggttcca gctactataa cgtatcataa gaagagtata acctcccagt
1501 tctcaccgtt attcacagcg ctattcgagc gcttccagag atgccttcga
1551 gaacgtatta ttcttcctgt tggtaagatt tcatcccttg agatggcagg
1601 atttgatgtc aagaacaagc actgcctcga gattgacctg tctaagtttg
1651 ataagtctca aggtgaattt cacttgctaa tccaggaaca cattttgaat
1701 ggtctaggat gtccagctcc gataactaag tggtggtgtg atttccatcg
1751 attctcttac attagagacc gtagagctgg tgttggtatg cctattagtt
1801 tccagagacg aactggcgat gcactcactt attttggcaa taccatcgtc
1851 accatggctg agtttgcctg gtgttatgac accgaccaat tcgaaaagct
1901 tttattctca ggcgatgatt ctctaggatt ttcactgctt ccccctgttg
1951 gtgacccgag taaattcaca actcttttca acatggaagc taaggtgatg
2001 gaacctgccg taccatatat ttgttcgaag ttcttactct ctgacgagtt
2051 cggtaacaca ttttccgttc cagatccatt gcgcgaggtt cagcggttag
2101 gaacaaagaa aattccctat tctgacaatg atgaattctt gtttgctcac
2151 ttcatgagct ttgttgatcg attgaagttt ttggaccgaa tgtctcagtc
2201 gtgtatcgat caactttcga ttttcttcga attgaaatac aagaagtctg
2251 gggaagaggc tgctttaatg ttaggcgcct ttaagaagta taccgctaat
2301 ttccagtcct acaaagaact ctattattca gatcgtcgtc agtgcgaatt
2351 gatcaattcg ttttgtagta cagagttcag ggttgagcgt gtaaattcca
2401 acaaacagcg aaagaattat ggaattgaac gtaggtgcaa tgacaaacgt
2451 cgaactccaa ctggctcgta tggtggaggc gaagaagcag agacgaaggt
2501 ctcacaaaca gaatcgacgg gaacgaggtc acaaaagtcc cagcgagaga
2551 gcgcgttcaa atctcagact attccgcttc ctaccgttct atcaagtgga
2601 tggttcggaa ctgacagggt catgccgcca tgtgaacgtg gcggagttac
2651 ccgagtctga ggcctctcgt ttagagttat cggcggaaga ccatgatttt
2701 gacgatacag attggttcgc cggtaacgaa tgggcggaag gtgctttctg
2751 aaacctcccc ttccgcatct ccctccggtt ttctgtggcg ggagctgagt
2801 tggcagtatt gctataaact gtctgaagtc actaaacaca ttgtggtgaa
2851 cgggttgtcc atccagctta cggctaaaat ggtcagtcgt agaggaatct
2901 acgccagcag acttacaagt ctctgaggca cctttgaaac catctcctag
2951 gtttcttcgg aaggacttcg gtccgtgtac ttctagcaca acgtgctagt
3001 ttcagggtac gggtgccccc cacttttgtg gggcctccaa aaggagacca