Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus gene for coat protein, complete cds, strain:WL.
ACC No: D00463
Dated: 2007-07-10 | Length: 1267 | CRC: 95481852
ID D00463; SV 1; linear; genomic RNA; STD; VRL; 1267 BP.
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AC D00463;
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DT 05-MAR-1991 (Rel. 27, Created)
DT 10-JUL-2007 (Rel. 92, Last updated, Version 5)
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DE Cucumber mosaic virus gene for coat protein, complete cds, strain:WL.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-1267
RX PUBMED; 2732712.
RA Quemada H., Kearney C., Gonsalves D., Slightom J.L.;
RT "Nucleotide sequences of the coat protein genes and flanking regions of
RT cucumber mosaic virus strains C and WL RNA 3";
RL J. Gen. Virol. 70:1065-1073(1989).
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CC Submitted in computer readable form by H.D. Quemada on 15-Aug-1989.
CC In , they compare these
CC sequences of C and WL strains to those published for other
CC cucumber mosaic virus strains, and present evidence that C strain
CC belongs to the WT group while WL strain belongs to the S group.
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FH Key Location/Qualifiers
FH
FT source 1. .1267
FT /organism="Cucumber mosaic virus"
FT /strain="WL"
FT /mol_type="genomic RNA"
FT /note="588 bp upstream of HindIII site."
FT /note="clones pWL3.4.1, pWL3.4.2 and pWL3Z8.1"
FT /note="propagated in Nicotiana tabacum cv. Xanthi"
FT /db_xref="taxon:12305"
FT misc_feature 232
FT /note="start site of subgenomic RNA 4 (putative)"
FT CDS 285. .941
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:P24147"
FT /db_xref="InterPro:IPR000247"
FT /db_xref="UniProtKB/Swiss-Prot:P24147"
FT /protein_id="BAA00358.1"
FT /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLKLNRT
FT LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIALHVDVEHQRIPISRMLPT"
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SQ Sequence 1267 BP; 282 A; 303 C; 299 G; 383 T; 0 other;
d00463 Length: 1267 10-JUL-2007 Type: N Check: 4757 ..
1 tgttttgtta cgttgtatcc atgtatatat atatcacgtt tatcttccgt
51 atgtaaatac atgtgagtct agagttccgt gtgagttgta acggtagaca
101 tctgtgacgc gaagccgctt gaagacttcc catctggggt tagtaagtcc
151 acatcacagt tttaagattc aattcctttt gctccctgtt gggcccctta
201 ctttctcatg gatgcctctc cgcgagttag cgtttagttg ttcacctgag
251 tcgtgtgttt tgtattttgc gtcttagtgt gcctatggac aaatctggat
301 ctcccaatgc tagtagaacc tcccggcgtc gtcgcccgcg tagaggttct
351 cggtccgctt ctggtgcgga tgcagggttg cgtgctttga ctcagcagat
401 gctgaaactc aatagaaccc tcgccattgg tcgtcccact cttaaccacc
451 caaccttcgt gggtagtgaa agctgtaaac ccggttacac tttcacatct
501 attaccctga aaccgcctga aattgagaaa ggttcatatt ttggtagaag
551 gttgtctttg ccagattcag tcacggacta tgataagaag cttgtttcgc
601 gcattcaaat cagggttaat cctttgccga aatttgattc taccgtgtgg
651 gttacagttc ggaaagtacc ttcatcatcc gatctttccg tcgccgccat
701 ctctgctatg tttggcgatg gtaattcacc ggttttggtt tatcagtatg
751 ctgcgtccgg agttcaggcc aacaataagt tactttatga cctgtccgag
801 atgcgtgctg atatcggcga catgcgtaag tacgccgtcc tggtttactc
851 gaaagacgat aaactagaga aggacgagat tgcacttcat gtcgacgtcg
901 agcatcaacg aattcctatc tcacggatgc tcccgactta gtccgtgtgt
951 ttaccggcgt ccgagaacgt taaactacac tctcaatcgc gagtgctgac
1001 ttggtagtat tgcttcaaac tgcctgaagt ccctaaacgt gttgttgcgc
1051 ggggaacggg tgtccatcca gcttacggct aaaatggtcg tgtctttcac
1101 acgccgatgt cttacaagat gtcgagatac ccttgaaatc atctcctaga
1151 tttcttcgga agggcttcgt gagaagctcg tgcacggtaa tacacttgat
1201 attaccaaga gtgcgggtat cgcctgtggt tttccacagg ttctccaggt
1251 tctccataag gagacca