Sequence of DPV Potato leafroll virus
Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase and coat protein, complete and partial cds.
ACC No: D00530
Dated: 2007-07-19 | Length: 5987 | CRC: -1041039836
ID D00530; SV 1; linear; genomic RNA; STD; VRL; 5987 BP.
XX
AC D00530; X14600;
XX
DT 02-JUL-1990 (Rel. 24, Created)
DT 19-JUL-2007 (Rel. 92, Last updated, Version 14)
XX
DE Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins,
DE RNA-dependent RNA polymerase and coat protein, complete and partial cds.
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5987
RX PUBMED; 2732710.
RA Mayo M.A., Robinson D.J., Jolly C.A., Hyman L.;
RT "Nucleotide sequence of potato leafroll luteovirus RNA";
RL J. Gen. Virol. 70:1037-1051(1989).
XX
DR GOA; P17525.
DR UniProtKB/Swiss-Prot; P17525; READ_PLRV1.
XX
CC Submitted in computer readable form by M. A. Mayo on 24-Jan-1990.
CC In , they suggested that the
CC viral polymerase was translated by frameshift readthrough near the
CC end of the 70K polypeptide, and 53K protein was translated by
CC readthrough of the amber termination codon of the coat protein
CC gene. In the sequence, 5' end may not be the extreme end
CC (discussed in ).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5987
FT /organism="Potato leafroll virus"
FT /strain="1"
FT /mol_type="genomic RNA"
FT /country="United Kingdom:Scotland"
FT /isolation_source="field isolate obtained from infected
FT tubers of the potato variety Cara grown in Scotland"
FT /note="synonym: Potato leaf roll virus"
FT /note="5' end of viral RNA"
FT /db_xref="taxon:12045"
FT CDS 175. .918
FT /codon_start=1
FT /product="28K protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/Swiss-Prot:P17518"
FT /protein_id="BAA00416.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSFLHVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGLTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 308. .2227
FT /codon_start=1
FT /product="70K protein"
FT /note="ORF2a"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/Swiss-Prot:P17519"
FT /protein_id="BAA00417.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFLHPAFNFRGTSTMSASSGDY
FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALTSKMRLDCQTVGDMTWRHLS
FT EMLFASWNSVKEVSLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTDKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKQNSLPPTSTQSTS
FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFTPSWRIKQQDSAGQKPDLKL
FT NSKA"
FT variation 479
FT /note="t in cloned cDNA from first RNA preparation ( first
FT clones); c in cloned cDNA from second RNA preparation
FT (second clones)"
FT variation 521
FT /note="c in first clones; t in second clones"
FT variation 571
FT /note="c in first clones; t in second clones"
FT variation 937
FT /note="c in first clones; t in second clones"
FT variation 1474
FT /note="g in first clones; a in second clones"
FT variation 1611
FT /note="a in first clones; g in second clones"
FT CDS <1645. .3495
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2b (see comment)"
FT /note="putative"
FT /db_xref="GOA:P17520"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/Swiss-Prot:P17520"
FT /protein_id="BAA00418.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA
FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG
FT QKLCQVHPELADKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPAHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS
FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT variation 1755
FT /note="t in first clones; c in second clones"
FT variation 1774
FT /note="t in first clones; c in second clones"
FT variation 1969
FT /note="g in first clones; a in second clones"
FT variation 2004
FT /note="g in first clones; a in second clones"
FT variation 2020
FT /note="a in first clones; g in second clones"
FT variation 2031
FT /note="c in first clones; t in second clones"
FT variation 2083
FT /note="c in first clones; a in second clones"
FT variation 2085
FT /note="c in first clones; t in second clones"
FT variation 2118
FT /note="c in first clones; a in second clones"
FT variation 2125
FT /note="c in first clones; a in second clones"
FT variation 2169
FT /note="t in first clones; g in second clones"
FT variation 2470
FT /note="g in first clones; a in second clones"
FT variation 2565
FT /note="g in first clones; a in second clones"
FT variation 2583
FT /note="g in first clones; a in second clones"
FT variation 2586
FT /note="a in first clones; g in second clones"
FT variation 2649
FT /note="c in first clones; t in second clones"
FT variation 2898
FT /note="t in first clones; c in second clones"
FT variation 3000
FT /note="t in first clones; c in second clones"
FT variation 3009
FT /note="t in first clones; c in second clones"
FT variation 3186
FT /note="t in first clones; c in second clones"
FT variation 3282
FT /note="c in first clones; t in second clones"
FT variation 3525
FT /note="a in first clones; g in second clones"
FT variation 3572
FT /note="t in first clones; a in second clones"
FT CDS 3693. .4319
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /note="putative"
FT /db_xref="GOA:P17522"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/Swiss-Prot:P17522"
FT /protein_id="BAA00419.1"
FT /translation="MSTVVVKGNVNGGVQQPRMRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLVGNTQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDSAGSFRVTIKVALQNPK"
FT CDS 3718. .4188
FT /codon_start=1
FT /product="17K protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/Swiss-Prot:P17524"
FT /protein_id="BAA00420.1"
FT /translation="MSMVVYNNQECEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT variation 3748
FT /note="t in first clones; g in second clones"
FT variation 3930
FT /note="g in first clones; a in second clones"
FT variation 3939
FT /note="a in first clones; t in second clones"
FT CDS <4320. .5846
FT /codon_start=1
FT /product="53K protein"
FT /note="ORF5 (see comment)"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q84829"
FT /protein_id="BAA00421.1"
FT /translation="VDSGSEPSPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQI
FT ILGSLGSQRMKYIEDENQNYTKFSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQP
FT TSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF
FT REGQLLERDATISFHVEAPTDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVV
FT LDEHLEGTGSANRVRRPPREGHTYMASPHEPEGKPVGNKPRDETPIQTQERQPDQTPSD
FT DVSDAGSVNSGGPTESLRLEFGVNSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTV
FT TDFSSKADLLENWDAEHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSW
FT KPPSLKAVSPAIAKLRSIRKSQPLEGGTLNKDATDGVSSIGSGSLTGGTLKRKATIEER
FT LLQTLTTEQRLWYENFKKTNPPAATQWLFEYQPPPQVDRNIAEKPFQGRK"
FT variation 4501
FT /note="t in first clones; g in second clones"
FT variation 4510
FT /note="g in first clones; c in second clones"
FT variation 4511
FT /note="t in first clones; a in second clones"
FT variation 4697
FT /note="t in first clones; c in second clones"
FT variation 4817
FT /note="t in first clones; c in second clones"
FT variation 4883
FT /note="c in first clones; t in second clones"
FT variation 4886
FT /note="t in first clones; c in second clones"
FT variation 4895
FT /note="t in first clones; c in second clones"
FT variation 4898
FT /note="c in first clones; t in second clones"
FT variation 5038
FT /note="c in first clones; t in second clones"
FT variation 5042
FT /note="g in first clones; a in second clones"
FT variation 5071
FT /note="a in first clones; g in second clones"
FT variation 5199
FT /note="c in first clones; t in second clones"
FT variation 5215
FT /note="g in first clones; a in second clones"
FT variation 5247
FT /note="t in first clones; c in second clones"
FT variation 5339
FT /note="c in first clones; t in second clones"
FT variation 5341
FT /note="c in first clones; t in second clones"
FT variation 5352
FT /note="t in first clones; c in second clones"
FT variation 5393
FT /note="c in first clones; t in second clones"
FT variation 5426
FT /note="t in first clones; c in second clones"
FT variation 5477
FT /note="c in first clones; t in second clones"
FT variation 5490
FT /note="a in first clones; g in second clones"
FT variation 5495
FT /note="t in first clones; c in second clones"
FT variation 5511
FT /note="a in first clones; t in second clones"
FT variation 5741
FT /note="t in first clones; g in second clones"
FT variation 5767
FT /note="c in first clones; t in second clones"
XX
SQ Sequence 5987 BP; 1665 A; 1514 C; 1447 G; 1361 T; 0 other;
d00530 Length: 5987 19-JUL-2007 Type: N Check: 177 ..
1 ctttatgata ctatgcaaat tgtgctacca gaaatccgta cagtatgcgt
51 aggattagcc gcttcaatgg gatctgttat cctggtcgga ggagaaatta
101 ccaaacgtct agcattcccg agaaattgca gctttagcgc ataaactcta
151 cactcattgc aaacgttata gcatatgatt gtattgaccc agtctggaac
201 cttgcttttt gaccaaagat ttaaactctc aaagtttctc ttcgttgtca
251 ttgcaacagg ctttcctctt ctcctgcagc aagcgagctt aatttacggc
301 tataatcatg aacagattta ccgcatatgc cgctcttttc ttcatgttct
351 ccctttgctc aactgcaaaa gaggcaggat ttctacatcc ggccttcaac
401 ttccgaggca cctccactat gagtgcctcg agtggggatt actctgcggc
451 acccaccccg ctatacaaat cgtgggcctt accatcgtca ttaaacttga
501 cgacccaacc accgccgccg cttacagatc ggagctacta cgagttagtt
551 caagctctta catccaaaat gcggctggat tgtcaaacgg ttggggacat
601 gacatggagg catttgtcag aaatgctatt tgcctcctgg aactccgtga
651 aagaagtatc cctcaaagcg gcctccgtga ccttatgggc aattatcaac
701 atttggttcg gtctctattg gacgcttgca aggttgatca ctttgttcct
751 ctggactttc agcatagaag ccttatgctt aattttgctc ggttgtataa
801 ccagcttgat ctacaagggc gcgctaagtc tttcagagca cttaccggtt
851 ttcctgttta tgtcccctct gaagattatt tggagggcag ctttctccaa
901 aaggaattac aagaatgaga gggctgtgga aggatacaaa gggttttcgg
951 tcccacagaa accgccaaag tctgccgtaa ttgaactaca acatgaaaac
1001 ggcagccatc tcgggtacgc gaactgcatt cgcttgtaca gtggagagaa
1051 cgccttggtg acagctgaac actgtctaga aggcgctttc gcaacgtcgt
1101 tgaaaactgg aaacaggatt ccgatgtcga ctttctttcc cattttcaaa
1151 agtgcccgta atgatatctc catactagta ggtccaccca actgggaagg
1201 tctactatca gtcaaaggag ctcatttcat tacagctgac aaaatcggca
1251 aaggtcctgc ctctttctac actcttgaga aaggggagtg gatgtgccat
1301 agtgccacca tagatggagc ccatcaccag ttcgtgtctg ttttatgcaa
1351 cactggaccc ggatattccg gaacagggtt ttggtcttca aagaatctgc
1401 ttggtgtgct taaaggcttc ccactggaag aggagtgtaa ctacaatgtt
1451 atgtctgtta taccctcgat cccgggaatc acttccccaa attatgtgtt
1501 tgagtcgacc gccgtaaaag gccgcgtctt ctcggatgaa gctgtgaaag
1551 agctagagcg ggaagcatcc gaagccgtca agaagcttgc cagatttaaa
1601 tcacttaccg acaagaactg ggctgatgat tatgactccg atgaggatta
1651 cggtctggag agagaggctg caacaaatgc gcccgcagag aaaactgctc
1701 aaacaaactc agcagagaag actgctccat caacttcagc agagaaaact
1751 gctctaacaa acaagccttt aaatgggcaa gcggcaccgt ccgccaaaac
1801 aaacggcaac tccgacatcc ccgacgccgc tacaagcgca ccaccaatgg
1851 acaaaatggt cgaacagatc atcacagcta tggtggggag aatcaatctc
1901 tcggagatag aggagaagat agtgagcagg gtgtctcaga aagccctgca
1951 gaagcccaaa caaaagaagc gcggaaggcg tggagggaag aacaagcaaa
2001 acagtttacc tcctacttca acgcaatcta caagtggggc gcccaagaag
2051 gaggctgccc cccaggcttc aggaagtgcg ggcacatccc gcgctactac
2101 cacccccgca ccagaggcga aacccagtgg gggcaaaaac tctgccaagt
2151 tcaccccgag ctggcggata aaacagcagg attcggctgg ccaaaagccg
2201 gatctgaagc tgaactccaa agcctgaatc tacaggctgc caggtggctc
2251 caacgcgcgg agtcagccac tatccctggc gcggaagcaa gaaagcgcgt
2301 gattgagaaa acagttgagg catacagaaa ttgtgtaact aacgccccac
2351 tgtgctccct taaatccaaa ctggattggg ctggctttca acaagatatc
2401 cgtgaagcag tccagtccct tgagctagac gctggtgtag gcattcccta
2451 tatcgcgtat ggcctccccg cacaccgagg atgggttgag gaccataagc
2501 ttctcccagt gctcactcag ctgacctttg accgactaca gaagatgtcg
2551 gaggccagct ttgaggatat gagcgcagaa gagctagttc aagaagggct
2601 ctgtgatcct atcagactat ttgtcaaagg agagccccac aaacagagca
2651 aactcgatga aggccgctac cgcctcatca tgtctgtttc cttggtggat
2701 caactggtag cccgggttct gttccaaaat cagaacaaaa gggaaatttc
2751 cctgtggagg tctgtgcctt ccaaacccgg ttttggcctt tcaactgaca
2801 ctcaaactgc tgaattcttg gagtgtcttc aaaaggtgtc tggagcgcca
2851 tctgtggaag aattgtgtgc aaatcacaag gagtacacgc gcccaactga
2901 ctgttccggt ttcgactggt cagtcgcgta ttggatgctg gaggatgata
2951 tggaggtgag aaatcgcctg acatttaata acacccagct caccaagcgt
3001 cttcgggctg cctggttgaa gtgcatagga aactccgtcc tgtgcctgtc
3051 cgatggcact ttacttgccc aaactgttcc cggtgtgcaa aagagcggaa
3101 gttacaatac aagttcctcc aactctagaa tccgggttat ggctgcctat
3151 cactgtggcg ccgactgggc aatggccatg ggggatgatg ctctcgaagc
3201 ccccaactcc gacctggagg agtataaaac actaggtttc aaagtcgagg
3251 taggtcgaga actcgaattc tgttcacaca tcttcagaaa tccgaccctc
3301 gccgttccgg tcaacaccaa caaaatgctt tacaagttga tccatggtta
3351 taatccggaa tgtggcaatc cagaagtgat tcaaaactat ctggctgcag
3401 tattctctgt gctgcaggaa ctccgacacg atcgtgagct cgttgccaag
3451 ctccaccagt ggttggttcc gagtgccacc acaaaagaac actgaaggag
3501 ctcactaaaa ctagccaagc atacacgagt tgcaagcatt ggaagttcaa
3551 gcctcgttac atcaaccgga ctaaatagat tataaattct tagcgggatt
3601 tgctttagga ttctcatccg caatcccatt ttcagtagcc ggtttatatt
3651 ttgtttacct aaagatttcc tcccacgtgc gatcaattgt taatgagtac
3701 ggtcgtggtt aaaggaaatg tcaatggtgg tgtacaacaa ccaagaatgc
3751 gaagaaggca atcccttcgc aggcgcgcta acagagttca gccagtggtt
3801 atggtcacgg cccctgggca acccaggcgc cgaagacgca gaagaggagg
3851 caatcgccgc tcaagaagaa ctggagttcc ccgaggacga ggctcaagcg
3901 agacattcgt gtttacaaag gacaacctcg tgggcaacac ccaaggaagt
3951 ttcaccttcg ggccgagtct atcagactgt ccggcattca aggatggaat
4001 actcaaggcc taccatgagt ataagatcac aagcatctta cttcagttcg
4051 tcagcgaggc ctcttccacc tcctccggtt ccatcgctta tgagttggac
4101 ccccattgca aagtatcatc cctccagtcc tacgtcaaca agttccaaat
4151 tacgaagggc ggcgccaaaa cttatcaagc gcggatgata aacggggtag
4201 aatggcacga ttcttctgag gatcagtgcc ggatactgtg gaagggaaat
4251 ggaaaatctt cagattccgc aggatccttc agagtcacca tcaaggtagc
4301 tttgcaaaac cccaaatagg tagactccgg atcagagcct agtccaagcc
4351 cacaaccaac acccactcca actccccaga agcacgagcg atttattgct
4401 tacgttggca tacctatgct aaccattcag gccagggaga acgacgacca
4451 aatcatattg ggttccttag ggagccaaag gatgaaatat atagaggacg
4501 agaaccagaa ttatacaaag tttagttctg agtattactc tcaatcgagc
4551 atgcaagccg tccctatgta ttacttcaat gtcccgaaag ggcaatggtc
4601 agtcgacatc agctgcgaag ggtatcaacc cactagcagc acctcggatc
4651 caaaccgggg taggagtgac gggatgatcg cgtattcaaa cgcggattcc
4701 gattattgga atgttggtga agcggatggt gtcaaaattt cgaagctacg
4751 caacgataac acctaccgcc aaggtcaccc agaacttgaa attaactcgt
4801 gtcattttcg cgagggtcaa ctccttgaac gggacgctac aattagcttc
4851 cacgttgaag cgcctactga tgggcgattc ttccttgttg gtcctgccat
4901 ccagaaaacc gcaaagtata actatactat ctcatacggt gactggacgg
4951 accgagacat ggaactgggg ctgatcaccg tggtgcttga tgaacattta
5001 gaaggcactg gttcggctaa cagagtgcgg cggcccccac gggagggcca
5051 cacctatatg gcctcgccgc acgaaccgga aggaaaaccg gttggaaata
5101 aaccaaggga cgaaaccccg atacaaacgc aggaaagaca acctgatcaa
5151 actccgtctg acgacgtatc cgatgctggt tcggtaaaca gcggcggccc
5201 aactgagtcg ctgcgattgg agttcggggt aaactcagat agtacctacg
5251 atgctacagt cgatggtaca gactggccca gaattcctcc accaaggcac
5301 ccacctgaac ctagagtttc cggcaattca agaactgtca ctgacttttc
5351 ttcgaaagcc gatctattgg agaattggga tgccgaacac ttcgaccctg
5401 gttattccaa agaagatgtc gctgctgcta ctattatagc gcacggcagt
5451 attcaagatg ggcgaagtat gttggagaag agagaggaaa atgtcaagaa
5501 caaaacctcc tcctggaagc ccccgtcact taaagcggtg agcccagcca
5551 tagccaaatt gcgctcgatt cgcaaatccc aaccccttga gggagggacc
5601 cttaataaag acgccactga tggtgtctca tctattggca gtggttctct
5651 aacaggtggc acgcttaaga ggaaggcaac tattgaagaa cgtttactgc
5701 agaccttaac aactgaacaa aggctgtggt acgagaattt taagaaaact
5751 aaccctccag ctgctaccca atggctgttt gaatatcagc cacctcccca
5801 agtagataga aacatagctg aaaagccatt ccaagggagg aaatgagtcg
5851 actcacgact taaaactgag tgtccgccgg acattaagcg gaacgaaagc
5901 cgaaaggtga ttaggctctc aacgtctgct agagaccgtc gaaagacgcg
5951 actgtgtagc caggatcctc ttacagggtt gtgtagt