Sequence of DPV Cucumber mosaic virus satellite RNA
Cucumber mosaic virus satellite RNA genomic RNA, complete genome, clone: CMVYSAT.
ACC No: D00542
Dated: 2007-12-21 | Length: 369 | CRC: -1990022568
ID D00542; SV 1; linear; genomic RNA; STD; VRL; 369 BP.
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AC D00542;
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DT 05-MAR-1991 (Rel. 27, Created)
DT 21-DEC-2007 (Rel. 94, Last updated, Version 20)
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DE Cucumber mosaic virus satellite RNA genomic RNA, complete genome, clone:
DE CMVYSAT.
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KW .
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OS Cucumber mosaic virus satellite RNA
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded RNA satellites;
OC Small linear single stranded RNA satellites.
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RN [1]
RA Hidaka S., Ishikawa K., Takanami Y., Kubo S., Miura K.;
RT "Complete nucleotide sequence of RNA 5 from cucumber mosaic virus (strain
RT Y)";
RL FEBS Lett. 174:38-42(1984).
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RN [2]
RP 85-349
RA Kaper J.M., Duriat A.S., Tousignant M.E.;
RT "The 368-nucleotide satellite of cucumber mosaic virus strain Y from Japan
RT does not cause lethal necrosis in tomato";
RL J. Gen. Virol. 67:2241-2246(1986).
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RN [3]
RA Masuta C., Kuwata S., Takanami Y.;
RT "Effect of extra 5' non-viral bases on the infectivity of transcripts from
RT a cDNA clone of satellite RNA (strain Y) of Cucumber mosaic virus";
RL J. Biochem. 104:841-846(1988).
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RN [4]
RX PUBMED; 2794979.
RA Devic M., Jaegle M., Baulcombe D.;
RT "Symptom production on tobacco and tomato is determined by two distinct
RT domains of the satellite RNA of cucumber mosaic virus (strain Y)";
RL J. Gen. Virol. 70:2765-2774(1989).
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RN [5]
RA Masuta C., Takanami Y.;
RT "Determination of sequence and structural requirements for pathogenicity of
RT a cucumber mosaic virus satellite RNA (Y-satRNA)";
RL Plant Cell 1:1165-1173(1989).
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CC These data kindly submitted in computer readable form by:
CC Martine J. Devic
CC The Sainsbury laboratory
CC John Innes Institute
CC Colney lane
CC Norwich NR4 7 UH
CC U.K.
CC To localize the active domains of the Y satellite RNA, recombinant
CC RNA molecules were prepared in . The determinant for symptom production on tabacco lies
CC in the region between nucleotides 1 and 219. The domain for
CC necrotic symptoms on tomato resides on the 3' half of the molecule
CC beyond nucleotide 219. The cDNA clone was short of the full
CC length by 6 nucleotides at the 5' end. The missing Y satellite RNA
CC sequence was known in .
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FH Key Location/Qualifiers
FH
FT source 1. .369
FT /organism="Cucumber mosaic virus satellite RNA"
FT /mol_type="genomic RNA"
FT /isolation_source="Cucumber mosaic virus strain Y"
FT /clone="CMVYSAT"
FT /db_xref="taxon:12436"
FT misc_feature 1. .369
FT /note="Y satellite RNA"
FT misc_difference 161
FT /replace="c"
FT /citation=[1]
FT misc_difference 167
FT /replace="c"
FT /citation=[1]
FT misc_difference 173
FT /replace="c"
FT /citation=[1]
FT misc_difference 234
FT /replace=""
FT /citation=[1]
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SQ Sequence 369 BP; 73 A; 84 C; 110 G; 102 T; 0 other;
d00542 Length: 369 21-DEC-2007 Type: N Check: 3188 ..
1 gttttgtttg atggagaatt gcgtagaggg gttatatctg cgtgaggatc
51 catcactcgg cggtgtggga tacctccctg ctaaggcggg ttgagagtgt
101 atctcggact ggaggcggga tgtctgcggg tgttccgtct gctgcccacg
151 atggtgggag tcacccaagg ggtgactttt tcagctctgc atttctcatt
201 tgagcccccg ctcagtttgc tagcaaaacc cggcacatgg ttcgccgtta
251 ctatggattt cgaaagaaac actctgttag gtggtatcgt ggatgacgca
301 cgcagggaga agctaaggct tatgctatgc tgatctccgt gaatgtctat
351 acattcctct acaggaccc