Sequence of DPV Kennedya yellow mosaic virus
Kennedya yellow mosaic virus genomic RNA, complete genome.
ACC No: D00637
Dated: 2007-12-14 | Length: 6362 | CRC: 588641284
ID D00637; SV 1; linear; genomic RNA; STD; VRL; 6362 BP.
XX
AC D00637;
XX
DT 19-NOV-1990 (Rel. 25, Created)
DT 14-DEC-2007 (Rel. 94, Last updated, Version 10)
XX
DE Kennedya yellow mosaic virus genomic RNA, complete genome.
XX
KW .
XX
OS Kennedya yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Tymovirus.
XX
RN [1]
RP 6283-6361
RA van Belkum A., Bingkun J., Rietveld K., Pleij C.W., Bosch L.;
RT "Structural similarities among valine-accepting tRNA-like structures in
RT tymoviral RNAs and elongator tRNAs";
RL Biochemistry 26:1144-1151(1987).
XX
RN [2]
RP 1-6362
RX PUBMED; 2324710.
RA Ding S., Keese P., Gibbs A.;
RT "The nucleotide sequence of the genomic RNA of Kennedya yellow mosaic
RT tymovirus-Jervis Bay isolate: relationships with potex- and carlaviruses";
RL J. Gen. Virol. 71:925-931(1990).
XX
RN [3]
RP 5666-5713
RA Ding S., Howe J., Keese P., Mackenzie A., Meek D., Osorio-Keese M.,
RA Skotnicki M., Srifah P., Torronen M., Gibbs A.;
RT "The tymobox, a sequence shared by most tymoviruses: its use in molecular
RT studies of tymoviruses";
RL Nucleic Acids Res. 18:1181-1187(1990).
XX
DR RFAM; RF00233.
XX
CC These data kindly submitted in computer readable form by:
CC Shou-wei Ding
CC Molecular & Evolutionary Systematics
CC Research School of Biological Sciences
CC Australian National University
CC GPO Box 475
CC Canberra, A.C.T., 2601
CC Australia
CC The 3'-terminal sequence (6261-6362 nt) of the genome reported
CC in can be folded into a
CC five-stem secondary structure, so-called tRNA-like structure.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6362
FT /organism="Kennedya yellow mosaic virus"
FT /isolate="Jervis Bay"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12158"
FT CDS 79. .2340
FT /codon_start=1
FT /note="ORF for overlapping protein"
FT /db_xref="InterPro:IPR004935"
FT /db_xref="UniProtKB/TrEMBL:O56971"
FT /protein_id="BAA00531.1"
FT /translation="MSNGFPTSSRCSSVDFTQGPLLAPSPRVGSRLLNGLPPNLPLDGP
FT TRPPTLPSQIGNPDQLLRKFPPPPPSAQDAGNPPTLHPLDASLHPAFICPLHEASKIHE
FT APKEEQVLPTSPQLPPDSHRFSAFSFNLSPPPKHPFRVHARCSDVLPTRTDPSSVSPSS
FT AVDQPLLLSCDPTRIPLHPPLPHARPLHLHPERSNPPLHPRGTLRRFIQPAHNSPLLAE
FT NQLHPLPKSQPLHHNSGILGTSPFHTDTKRSPPPRSEAASSQSSSILPLPRPGNRPGVL
FT PGPKVRGAPSSNLPLPTPQAPPRARERLQRSLHLHASRQNAPRLRPRRLRSDPIQQTRT
FT QVGHPQCVGQPTNLRAAQLPSPTKRGVPRSPQPTPENEAVLLTALAPPRRHSRSWPLLP
FT FPPSSLPEVVFASSKGKVHLRLSTQPPSSPQTSSSPPPPSPRTDASGIQTPLASPPSKR
FT KEKSLPHPSHQPPSHSKRNLRRHSALPLLLPIHPTKTTQPHPAVPQPTAGPTPHPPPTK
FT KIPLHPPKSQERHPSPPPDVFHDCQPSSPTSHVVGYRRLLGSGISLPFKLAFWRRRSPN
FT PARHLPPPPPPRKLHSELDSNSLSRSSSFSLSPLCSLPPSPSPSEQLPTVSAPPTPSPI
FT PATPLPGSRHPSPIRPTNPRRTTPCSSNHRTQTREFQPKQPQPKLLGRFKPPTEEFLQR
FT QSPRSQQTYAYLLKYYTPQPQPPSPIRIDSLTLSERWAAELFRSPSPSRSYQHHPFSSP
FT "
FT CDS 86. .5710
FT /codon_start=1
FT /note="ORF for replicase protein"
FT /db_xref="GOA:P36304"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProtKB/Swiss-Prot:P36304"
FT /protein_id="BAA00532.1"
FT /translation="MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQD
FT LQPFLLKSGIPINSFGSSPHPHPAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQ
FT RKNKFFQHLHNYRLTPTDSVRFPSTSPHLPNTPFVFMHDALMYYQPEQILHLFHQVPQL
FT TNLFCSLVTPPESHFTHLSLMPDLYTFTLKGQTLHYTPEGHSAGSYNQPITALSWLKIN
FT SILSPNLNLSITILESWGPLHSILIQRGLPLPDPKLLVRSLPPFSRSPDPETDLVSFQV
FT PKSVELPQATFLSQPLRHRLVPESVYNALFTYTRAVRTLRVSDPAGFVRTQSNKPEHKW
FT VTPSAWDNLQTFALLNCPLRPNVVYHVLLNPLQKMKLYFSQHWRRLGVIAAPGLFCLSL
FT LLRSQKWSLPLPKAKSISVFRRNLLLPPKPHRPPLLPHPEQMLQEFKLPWHRPPPKGKR
FT NPFLTLLINLLHIPREICAGIRRYPSYYQSIQPKPLNPIQQFRNQLLAQLHTLPLPKKF
FT LSILPRARKDIPLLPRMSFTTVNLPLQPPMWLAIGASLVPELAFLLSWLSGDVDLQTQH
FT DIYHHHLHPENFTLSWTRTPYLALAPSPFLPYAHSPLPPLPVNSSPLFPPPPPLPPSQP
FT PLSQGPATQAPSAQPTPGEPLLAPPTTELKPESSNPNNPNPSSSAGSNPPPKSSSSDNP
FT PAPNKPTPTSSSTTPPSPNLPLQFGSIHSPFLSDGQLNYSALPPPQDPTNTTLSLLPEP
FT KPPTEVQSPLMADPTCVGPAVSFSSLYPRDFFPNTASFLTRLRLSPPTPLPMPKNNCLL
FT TAVAPSLHINPHRLWTSLQEVLPDSLLSNSEIDSVGMSTDLLTALSHLFNFQAVVHSER
FT GDILFGLQSAKTVIHIYHTNGPPAHYSPPPKIIGSNSPPSSQQHPLEQAALRFKYQGSH
FT LPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIALDAMIDL
FT ARPKTVSMFHLAGFAGCGKTKPLQSLLSTRPFHSFRVSTPTTELRNEWKKDMNLPASQA
FT FRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGEYHSTSP
FT HSSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVRTADSYT
FT PGHFNLVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTLVALT
FT RSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPINLSSSFPRIFHLLPLLNKPISRRST
FT RLIGSHSPIFHNPRLTNIHLPPHIPTSYSQDFVVSNPIFQGQADPRLDTHFLPPTRLPL
FT QSELLPAQLSQTTKPTDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTS
FT AQFPWFDRPFSLSCQPSSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLL
FT GNQLFFNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWR
FT HTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRPPHL
FT YTHCGKSPADLSAWCQTHLTGQIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQ
FT LHVHLKTNVATQFGPLTCMRLTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSLI
FT DRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDE
FT AIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCRHSPPHEKALLSSFEL
FT PDSVISKISSSTKWLSKNAFYALPSKIRKAVIASRHSSSFPENPDVSQLEFELLQSFQF
FT "
FT misc_feature 5678. .5693
FT /note="tymobox"
FT misc_feature 5702. .5705
FT /note="initiation box"
FT misc_feature 5703
FT /note="virion protein mRNA start site"
FT CDS 5711. .6277
FT /codon_start=1
FT /note="ORF for virion protein"
FT /db_xref="GOA:P36303"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="UniProtKB/Swiss-Prot:P36303"
FT /protein_id="BAA00533.1"
FT /translation="MATNHVLASQLPVNTKSSEIPLQSGTPPPTIIYPFQIEMASLGTA
FT DASDSISIASNSLLASVTTLYRHAKLTSLKATIHPTGQAPAFPTTVALAWVPYNSTATS
FT AQILSVYGGQMFCIGGSINSLSPIDVPCNLTNVNPIIKDSVTYSDTPKLLLYSIAQETA
FT PTLATCSVTITGTLTLHSPLLQATA"
FT variation 6285
FT /replace="t"
FT /citation=[1]
FT variation 6320. .6321
FT /replace=""
FT /citation=[1]
FT variation 6338
FT /replace="tc"
FT /citation=[1]
FT variation 6342. .6343
FT /replace="ct"
FT /citation=[1]
FT variation 6349
FT /replace="cg"
FT /citation=[1]
XX
SQ Sequence 6362 BP; 1433 A; 2508 C; 958 G; 1463 T; 0 other;
d00637 Length: 6362 14-DEC-2007 Type: N Check: 278 ..
1 gtaacattac cagatcagcc ctcttaacag acaactgatc tttcctcaat
51 taatctgtca tctagtttgt gaaaactgat gtcaaatggc tttccaacta
101 gctctcgatg ctctagcgtc gacttcacac aaggacccct ccttgcaccc
151 agtcctagag tcggttcacg actccttaac ggactccctc caaacctacc
201 cctggatggt cccacaagac ctccaaccct tccttctcaa atcgggaatc
251 ccgatcaact ccttcggaag ttccccccac ccccacccag cgcacaagac
301 gctggaaacc cacctactct tcacccactg gatgcatctt tgcacccagc
351 cttcatctgt cctcttcatg aagcctcaaa aattcatgaa gctccaaagg
401 aagaacaagt tcttccaaca tctccacaac taccgcctga ctcccaccga
451 ttcagtgcgt tttccttcaa cctctcccca cctcccaaac acccctttcg
501 tgttcatgca cgatgctctg atgtactacc aacccgaaca gatccttcat
551 ctgtttcacc aagttccgca gttgaccaac ctcttctgct ctcttgtgac
601 cccaccagaa tcccacttca cccacctctc cctcatgccc gacctctaca
651 ccttcaccct gaaaggtcaa accctccatt acaccccaga gggacactcc
701 gccggttcat acaaccagcc cataacagcc ctctcctggc tgaaaatcaa
751 ctccatcctc tccccaaatc tcaacctctc catcacaatt ctggaatcct
801 ggggacctct ccattccata ctgatacaaa gaggtctccc cctcccagat
851 ccgaagctgc tagttcgcag tcttcctcca ttctcccgct cccccgaccc
901 ggaaaccgac ctggtgtcct tccaggtccc aaagtccgtg gagctccctc
951 aagcaacctt cctctcccaa cccctcaggc accgcctcgt gccagagagc
1001 gtctacaacg ctctcttcac ctacacgcga gccgtcagaa cgctccgcgt
1051 ctccgacccc gcaggcttcg ttcggaccca atccaacaaa cccgaacaca
1101 agtgggtcac ccccagtgcg tgggacaacc tacaaacctt cgcgctgctc
1151 aactgccctc tccgaccaaa cgtggtgtac cacgttctcc tcaacccact
1201 ccagaaaatg aagctgtact tctcacagca ctggcgccgc ctcggcgtca
1251 tagccgctcc tggcctcttc tgcctttccc tccttcttcg ctcccagaag
1301 tggtctttgc ctcttccaaa ggcaaagtcc atctccgtct ttcgacgcaa
1351 cctccttctt ccccccaaac ctcatcgtcc ccccctcctc cctcacccag
1401 aacagatgct tcaggaattc aaactcccct ggcatcgccc ccctccaaaa
1451 ggaaagagaa atcccttcct cacccttctc atcaacctcc ttcacattcc
1501 aagagaaatc tgcgccggca ttcggcgcta cccctcttac taccaatcca
1551 tccaaccaaa accactcaac cccatccagc agttccgcaa ccaactgctg
1601 gcccaactcc acaccctccc cctaccaaaa aaattcctct ccatcctccc
1651 aagagccagg aaagacatcc ctctcctccc ccggatgtct ttcacgactg
1701 tcaaccttcc tctccaacct cccatgtggt tggctatcgg cgcctccttg
1751 gttccggaat tagccttcct tttaagctgg ctttctggag acgtcgatct
1801 ccaaacccag cacgacatct accaccacca cctccacccc gaaaacttca
1851 ctctgagctg gactcgaact ccttatctcg ctctagctcc ttctcccttt
1901 ctcccctatg ctcactcccc ccttccccct ctcccagtga acagctcccc
1951 actgtttccg ccccccccac cccttccccc atcccagcca cccctctccc
2001 agggtcccgc cacccaagcc ccatccgccc aaccaacccc cggcgaacca
2051 ctccttgctc ctccaaccac cgaactcaaa ccagagagtt ccaacccaaa
2101 caaccccaac ccaagctcct cggcaggttc aaacccccca ccgaagagtt
2151 cctccagcga caatcccccc gctcccaaca aacctacgcc tacctcctca
2201 agtactacac cccccagccc caacctccct ctccaattcg gatcgattca
2251 ctcacccttt ctgagcgatg ggcagctgaa ttattccgct ctccctcccc
2301 ctcaagatcc taccaacacc accctttctc ttctccctga accaaagccg
2351 ccaaccgaag ttcagtcccc cctaatggcg gatccgactt gcgtcggccc
2401 cgctgtttcc ttttccagcc tctacccaag agacttcttc cccaacaccg
2451 cctctttcct caccagactc agactttctc cacccactcc ccttccaatg
2501 cccaagaaca actgccttct caccgcagtc gccccttccc tccatataaa
2551 ccctcaccgt ctctggactt ccctccagga agtcctccca gattccctcc
2601 tctccaactc tgagatagac tcagtcggca tgtccaccga tcttctcaca
2651 gctctctccc acctcttcaa cttccaagcc gtcgtccaca gtgaacgtgg
2701 tgacatcctc tttggccttc agtccgccaa gactgtcatc cacatctacc
2751 acaccaacgg cccccccgct cattactccc ccccccccaa aatcatcggc
2801 tcgaactccc ctccttcaag ccaacaacat cccttggaac aagctgctct
2851 tcgcttcaag taccaaggct cccaccttcc tttctcttcc ttccactcct
2901 tcaccacctc ggttcaacac gccaagaacc tcatttctaa catgaaaaat
2951 ggttttgacg gcgtcatgtc aacaatcgaa ccgagcatca ggcatcaacc
3001 tggccactcc cccagagaaa aattcattgc acttgatgca atgatagatc
3051 tggccagacc caaaaccgtc tccatgttcc acttggccgg ctttgccggc
3101 tgtggaaaga ccaaaccact ccaatccctc ctctccactc gacctttcca
3151 ttcattccgc gtctctactc ccaccactga gctgcgaaac gaatggaaaa
3201 aagacatgaa cctccccgcc tcccaggcct tccgattctg cacctgggaa
3251 tcttctctcc tcaaacagac caagattctc gtcatagacg agatctataa
3301 gctcccccgt ggttacctcg acctctgcat tttggcagac ccctgtcttg
3351 aactggtcat cattctcggc gaccctctac aaggcgagta ccactccact
3401 tcccctcact cttctaacca tcagctgcag tccgagacca cccgacttct
3451 ccccttcatt gatcactact gttggtggac ttatcgtgtc ccctctcaca
3501 tagctgatct tttctccgtc ccaagcttca atcgaagcga gggacattac
3551 caaatggccg tccgcacagc agactcctac acccccggcc atttcaatct
3601 tgtcaacagc gttgccacag ccaacgccgt cattcaactt ggcttccctg
3651 caaccaccat cagcgccagt caaggagtca ctcaccacaa ccgagtgacc
3701 attttgctag acaagcactc tcgtcttctc tcccccagca acaccttggt
3751 tgccctcacc cgctccacag tcggagtcga gtttcttggt gacattggct
3801 ctttgtcagg caccaacaac tcatccgaca tgttctccag ggccatatac
3851 cgacagccca tcaacctctc ttcttctttc ccaagaattt tccaccttct
3901 ccctcttctg aacaaaccaa tttcccggag atccacccgc ctcatagggt
3951 ctcattcacc catcttccac aaccctaggc tcaccaacat ccatcttccc
4001 ccccacatcc ctacatccta ctctcaagac ttcgtcgtct ccaaccctat
4051 tttccagggc caggccgacc cccgtcttga cacccacttc ctccctccaa
4101 cccgtcttcc tcttcagtcc gagcttctcc cagctcaatt gagtcagact
4151 accaaaccca ctgactcttt caccaacaac acccctttca ccccggtcta
4201 ccctggcgaa aactttgaaa atctcgccgc cttcttcctc cccgctcacg
4251 accccgagtt aaaggaagtg accaggcgcg accaaacaag cgcccaattc
4301 ccttggttcg accgcccttt ctccctttcc tgtcagccct cctctctcat
4351 cgcagcaaaa cactcccctt cccaagaccc cactttgctg cctttctcaa
4401 ttccaaaaag actccgattc cggaagtctg acaaccccca cgtcctttcc
4451 gccatcgacg tcttgctagg caaccaactt ttcttcaatc tttgcaaggc
4501 ttaccgtcgt aaccccaccc acgtaggtcc ctttaacccg gctctgtttg
4551 ctgagtgcat cgccctcaac gattacgccc agctctcctc aaaaacccaa
4601 gccactctcg tggccaacca ctcccgttct gaccccgact ggcgccacac
4651 agcagtcaaa atttttgcga agtcccaaca taaagtcaac gacgcctcta
4701 tctttggcaa ctggaaagct tgtcaaactc tggctctcat gcacgacttc
4751 gtaattctca gcctaggccc agttaaaaaa tatcaacgca tctttgatgc
4801 tcttgaccgg cccccccacc tttacaccca ctgtggaaaa agcccagccg
4851 acctctccgc ttggtgccaa acccacctca caggtcaaat taagctaacc
4901 aacgactaca cagcttttga ccagtcccag catggagagt cagtaatctt
4951 agaagccctc aaaatgaaac gtctctccat tccttctcac ctcatccaac
5001 tgcacgttca cctcaaaacg aacgttgcaa cgcagttcgg ccctctgacc
5051 tgcatgcgcc tcactggcga acctggcacc tacgacgaca actcagacta
5101 caaccttgct gtcatccact ctcagtttga catgaaggac atacccgtca
5151 tggtgtctgg ggatgactct ctcatcgacc gtcaaccccc tttagctcag
5201 tcttgggaag caaccaaacg tcttctccat ctgcgattca agactgagaa
5251 gaccacccac cctctcttct gcgggtacta cactggctct gccggtgcca
5301 tccgtaatcc tctcgctctt ttttccaaac tcatgatcgc catcgacgat
5351 gaagcgatcc acgaccgccg cctaagttac cttacagaat tctccacagg
5401 ccatcaacta ggcgacgccc tctggactct tcttccagaa tccacccaaa
5451 tttaccagtc ggcatgtttt gactacttct gccgtcattc tccccctcat
5501 gaaaaggctc ttctatcatc ctttgaactg cctgactctg tcatctccaa
5551 aatctcttcc tccaccaagt ggctctcaaa gaacgctttc tatgctctgc
5601 cttcaaaaat acgcaaagcc gtgatcgcct cccgccactc ttcctccttc
5651 ccggaaaacc ctgacgtctc ccaactagag tttgaattgc ttcaatcctt
5701 tcaattctag atggccacca atcacgtcct cgcttcccaa ctcccagtga
5751 acaccaagtc ctctgaaatt cctcttcaga gtggcactcc accccccaca
5801 ataatctacc ctttccaaat cgagatggcc agccttggca cggccgatgc
5851 ttctgattcc atcagcatcg cctccaactc tctcctcgcc tccgtaacca
5901 ccttgtaccg gcatgccaaa ttgacctccc tcaaagctac catccaccca
5951 accggccaag ccccagcctt cccaaccacc gttgccctgg cctgggttcc
6001 ctacaactcc accgccacct ctgctcagat tctctccgtc tacggcggcc
6051 agatgttctg catcggcggc tccatcaact ctctctcccc aatcgacgtt
6101 ccctgtaacc tcaccaacgt caaccccatc atcaaagact cagtcactta
6151 ctctgacacc cccaagctcc tcctctattc catcgcccag gagacagctc
6201 ccaccctcgc tacctgttcc gtaaccatca ccggaaccct cactcttcat
6251 tctcctctcc ttcaggccac agcctgattc aggtcgccag tgcgacaccc
6301 gttcccacac aacgggcatt ggggtgcaac tcccccgtcc atcctggacg
6351 tcaccaggac ca