Sequence of DPV Cymbidium ringspot virus

Cymbidium ringspot virus (CyRSV) defective interfering (DI) RNA.

ACC No: D00719

Dated: 2007-12-07 | Length: 499 | CRC: -67740283

                
ID   D00719; SV 1; linear; genomic RNA; STD; VRL; 499 BP.
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AC   D00719;
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DT   16-MAR-1992 (Rel. 31, Created)
DT   07-DEC-2007 (Rel. 94, Last updated, Version 4)
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DE   Cymbidium ringspot virus (CyRSV) defective interfering (DI) RNA.
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KW   .
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OS   Cymbidium ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Tombusvirus.
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RN   [1]
RP   1-499
RX   PUBMED; 1697328.
RA   Rubino L., Burgyan J., Grieco F., Russo M.;
RT   "Sequence analysis of cymbidium ringspot virus satellite and defective
RT   interfering RNAs";
RL   J. Gen. Virol. 71:1655-1660(1990).
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DR   RFAM; RF00171.
DR   RFAM; RF00176.
DR   RFAM; RF00215.
DR   RFAM; RF00510.
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CC   These data kindly submitted in computer readable form by:
CC   Luisa Rubino
CC   Consiglio Nazionale delle Ricerche
CC   Via Amendola 165/A
CC   70126 Bari
CC   Italy
CC   DI RNA is made up of sequences from six different regions of CyRSV
CC   genomic RNA.  The entire sequence of DI RNA is identical to parts
CC   of genomic RNA with the exception of four single-base
CC   substitutions, five single-base deletions and two single-base
CC   insertions.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .499
FT                   /organism="Cymbidium ringspot virus"
FT                   /mol_type="genomic RNA"
FT                   /note="clones pDI[4,77,107,109]"
FT                   /db_xref="taxon:12144"
FT   misc_feature    1. .499
FT                   /note="defective interfering RNA, DI RNA"
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SQ   Sequence 499 BP; 124 A; 104 C; 145 G; 126 T; 0 other;

d00719 Length: 499  07-DEC-2007  Type: N  Check: 3256  ..

       1  ggaaatcctc caggatacct atccggtgat ttgcgctact gttgctttgc
      51  gtagaggatt tctctcctgt tatcaggggt ttgaaggcag ggtctacctt
     101  tcggggggat aaattgtaac ttcctgcaaa taagcaaaat gggaagcagt
     151  ttgtgagaag gttggggtgg cccatcgctt agggtatgac gggttcctgt
     201  catactacag tggtgcgaaa ctccgtactt acacgcgagc tgtggagagt
     251  ctgcattcac tcctatttca gagagggata gtcattgact accttcgtga
     301  gaaagctagt aggacagact cttcagtcta ggttggtgga agcaggagaa
     351  cactgcttga gggtacaggt ttcttgttca cgactagcgg agaacatttg
     401  tggaaaccaa ccaagacacg gttgatctca cccttcgggg ggctatagag
     451  atcgctggaa gcactaccgg acaaccggaa cattgcagca atgcagggg