Sequence of DPV Cymbidium ringspot virus satellite RNA

Cymbidium ringspot virus satellite RNA gene for hypothetical protein, complete cds.

ACC No: D00720

Dated: 2007-11-02 | Length: 618 | CRC: -212307923

                
ID   D00720; SV 2; linear; genomic RNA; STD; VRL; 618 BP.
XX
AC   D00720;
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DT   30-MAR-1992 (Rel. 31, Created)
DT   02-NOV-2007 (Rel. 93, Last updated, Version 9)
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DE   Cymbidium ringspot virus satellite RNA gene for hypothetical protein,
DE   complete cds.
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KW   .
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OS   Cymbidium ringspot virus satellite RNA
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded RNA satellites;
OC   Small linear single stranded RNA satellites.
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RN   [1]
RP   1-618
RA   Rubino L., Burgyan J., Grieco F., Russo M.;
RT   ;
RL   Submitted (24-OCT-1990) to the EMBL/GenBank/DDBJ databases.
RL   Luisa Rubino, Consiglio Nazionale delle Ricerche; Via Amendola 165/A, 70126
RL   Bari, Italy (Tel:39-80-242911, Fax:39-80-242813)
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RN   [2]
RX   PUBMED; 1697328.
RA   Rubino L., Burgyan J., Grieco F., Russo M.;
RT   "Sequence analysis of cymbidium ringspot virus satellite and defective
RT   interfering RNAs";
RL   J. Gen. Virol. 71:1655-1660(1990).
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RN   [3]
RA   Rubino L.;
RT   "Cymbidium ringspot virus satellite RNA";
RL   Unpublished.
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CC   In some regions (e.g. 186-238 nt) the sequence of satellite RNA
CC   is very similar (60-100% identical) to genomic RNA.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .618
FT                   /organism="Cymbidium ringspot virus satellite RNA"
FT                   /mol_type="genomic RNA"
FT                   /clone="pCS[9,19,41, 2/47,2/52,157]"
FT                   /db_xref="taxon:192023"
FT   misc_difference 115
FT                   /replace=""
FT                   /citation=[2]
FT   CDS             333. .458
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF 2"
FT                   /db_xref="UniProtKB/TrEMBL:Q66228"
FT                   /protein_id="BAA00622.1"
FT                   /translation="MLLSVRKDRWFLTTNGGHAAKGLLGIRTAEVTVCLPPYCVR"
FT   misc_difference 416
FT                   /replace="a"
FT                   /citation=[2]
FT   misc_difference 618
FT                   /replace="aaa"
FT                   /citation=[2]
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SQ   Sequence 618 BP; 151 A; 142 C; 144 G; 181 T; 0 other;

d00720 Length: 618  02-NOV-2007  Type: N  Check: 1306  ..

       1  gaaattccct gggttcaatc ccaatgcgac caggaaatcg ttgggttttt
      51  ctctctgaag atctttttgt ttcgcttgcg ctatcaacac aagcaggaca
     101  ctgtaagtcc agctggcaca gccacacctg aacgtggcca tttacctaga
     151  atcgagtttg atacctcttt ctggaagaga tcttttgggt ttgaaggcag
     201  ggtctacccg tgaggggata aatgtaactt cctgcaattt tccaactcgt
     251  ggtattatag ggacgtgaag tccgtcgcca cgctcctcta tgtaattctc
     301  gcagcacctg aagctcaagt cctccaggag taatgttgtt gagtgttagg
     351  aaggataggt ggtttctcac aaccaatggt ggtcatgcgg ccaaaggtct
     401  cctcggtatt agaacggctg aggttactgt ctgtcttccg ccatactgcg
     451  ttcgttgagc ttgagatgtc acttaattgt gacaaatcaa ctatgccgat
     501  tcttgccact aggattgaaa ccctacgtgg actcctctgg acttaaggat
     551  ggttggcatt tgttagtaca gttccactgt acgtttcaaa caatctaatt
     601  gttgaaaaca acaaccca