Sequence of DPV Tobacco necrosis virus D
Tobacco necrosis virus D genomic RNA, complete genome.
ACC No: D00942
Dated: 2009-10-08 | Length: 3762 | CRC: 196893536
ID D00942; SV 1; linear; genomic RNA; STD; VRL; 3762 BP.
XX
AC D00942;
XX
DT 12-DEC-1991 (Rel. 30, Created)
DT 08-OCT-2009 (Rel. 102, Last updated, Version 12)
XX
DE Tobacco necrosis virus D genomic RNA, complete genome.
XX
KW .
XX
OS Tobacco necrosis virus D
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3762
RA Coutts R.H.;
RT ;
RL Submitted (08-APR-1991) to the EMBL/GenBank/DDBJ databases.
RL Contact:Robert H.A. Coutts Imperial College of Science, Technology and
RL Medicine, Department of Biology; SW7 2BB, Prince Consort Road, London SW7
RL 2BB, U.K.
XX
RN [2]
RX PUBMED; 1856691.
RA Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.;
RT "The complete nucleotide sequence of tobacco necrosis virus strain D";
RL J. Gen. Virol. 72:1521-1529(1991).
XX
RN [3]
RA Offei S.K., Coutts R.H.A.;
RT "Location of the 5'termini of tobacco necrosis virus strain D subgenomic
RT mRNAs";
RL J. Phytopathol. 144:13-17(1996).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3762
FT /organism="Tobacco necrosis virus D"
FT /strain="D"
FT /isolate="Rothamsted, U.K."
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12056"
FT misc_difference 1
FT /replace="a"
FT /citation=[2]
FT CDS 39. .2216
FT /codon_start=1
FT /transl_except=(pos:645. .647,aa:OTHER)
FT /product="82K protein"
FT /note="readthrough stop codon 645-647"
FT /db_xref="GOA:P27209"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/Swiss-Prot:P27209"
FT /protein_id="BAA00785.1"
FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV
FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED
FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV
FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEKXGGLLVTSGFTTPTWRGDPR
FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELQPTP
FT KPTPGAFNQMSRFSDRLSIHLPKTTRLTPREFLGFYTGRKLERYQKAVESLEMHPVREK
FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRFLRHSEEMLFKAINKTFGGR
FT TIFKGLSSDQAGEEFKTLWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPKSE
FT RAELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCDNI
FT KHIKHFRLANNGDDCMLVVERSDEKKVRNGLIEYYATLGFTMKVEPTVDVLERLEFCQT
FT RPVLVDGKYRMVRNLHQSMSKDLHSLHDLDSSAARNAWVTAVGTGGRCMNDGVPVLKEF
FT FKQFPDYNLEVKKGSDMAQKLRDDWKYKFNRTAAFQDLIPTQESRYSFWLAFGLLPDEQ
FT IALENGFSPLKMEIVNEQIQEETSLLQFSGA"
FT CDS 39. .647
FT /codon_start=1
FT /product="22K protein"
FT /db_xref="GOA:P27209"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/Swiss-Prot:P27209"
FT /protein_id="BAA00786.1"
FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV
FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED
FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV
FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEK"
FT misc_difference 142
FT /replace="t"
FT /citation=[2]
FT CDS 2213. .2401
FT /codon_start=1
FT /product="7K protein"
FT /db_xref="UniProtKB/TrEMBL:Q9YPI4"
FT /protein_id="BAA00787.1"
FT /translation="MKTHQFHLKIESRWKIQKMSVVGETNESIVRRGSRRVAIKKLAKL
FT PCAKKVMLSRTWVLQFQ"
FT CDS 2251. .2448
FT /codon_start=1
FT /product="7K protein"
FT /db_xref="UniProtKB/Swiss-Prot:P27211"
FT /protein_id="BAA00788.1"
FT /translation="MENTENVRSGRNQREYSKERQQEGGYKEVSKAAVRKEGDVKQDMG
FT PSVSMTVVGEKVEFTQHFHF"
FT misc_difference 2294
FT /replace=""
FT /citation=[2]
FT misc_difference 2376
FT /replace=""
FT /citation=[2]
FT misc_difference 2384
FT /replace=""
FT /citation=[2]
FT CDS 2448. .2648
FT /codon_start=1
FT /product="7K protein"
FT /db_xref="UniProtKB/Swiss-Prot:P27212"
FT /protein_id="BAA00789.1"
FT /translation="MAYIIVHQRDPFPLLGVWIIVIIIVAVIGLLNQSPPERPYQTFKE
FT DNSKIQYITIGGSTTTKVSTS"
FT CDS 2650. .3456
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:P27210"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/Swiss-Prot:P27210"
FT /protein_id="BAA00790.1"
FT /translation="MPKRGRVGLAESFQSKTKKQKENEYNAFQREKMERALANNARAAP
FT KSSGMTFRPLTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANITLAAAGAFSFTTQ
FT PLIPSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ
FT VSQCYQSITFPPYAGYGGASALNHKGSGGESLVSTLDTNRVDKRWYSTIGNAAFTALTS
FT IDKNQFCPATAIIAGDGGPAAATAVGDIFMRYDIEFIEPVNPSINV"
XX
SQ Sequence 3762 BP; 1032 A; 790 C; 952 G; 988 T; 0 other;
d00942 Length: 3762 08-OCT-2009 Type: N Check: 6775 ..
1 gatacctaac cagtgtctca gtgattaagt aatcagctat ggagtcctta
51 ccaattgtcc tattatccct tatttccaag gcagttgtgc tcatctgtag
101 tttgttaacc ctaataatcc aaaattccac agcagtgaca tggggcctag
151 catgcgtatg gttggcatat gtttcgttca ggttcttatt ccaagtcaag
201 atcacagtcc accccgcagc ccgcgagaca tttgagagca tggtgcgcaa
251 gttccaagct gagtctatgt ttagcgagga agccacacct tgcatagtca
301 gcgtaggtga caaggacgca gatctcaccc ccgatccaca aagagaggat
351 ataaaaattg tgaagtcttc gaggagagtg agttacgcag ttcgtgttgc
401 ccatgttgcc aaagcccagg tagggttact cgccaacagc agagctaatg
451 aattggtcta cagccggttg tgcagggaag agatggttaa acatggagtg
501 agacccagcc atatagcaca catggtgcca cttgctgtgg ctgcatgctt
551 cattcctttg gatagtgact ttctagccgc ttccatcaga cagggtgaag
601 gcatgaggga gaggagggcc cttctagggc cctcgtggga gaaataggga
651 ggcctattag tcacaagcgg attcacaacg ccaacatggc gtggtgatcc
701 gaggggtatg cttgtgacta aaggacctcc cctcgcgaaa ccccgtaaat
751 tgtaccgatt tactgggatg ggaacacata ttcggtacgg agtgcatgat
801 cactcattgg gcaatgttcg gcggggacta gtggaaagat tatatatggt
851 tgaagttaaa ggagaacttc aaccaactcc aaagcccacc cccggagcgt
901 tcaaccagat gtcccggttc agtgaccgac tgagtatcca tctgcctaag
951 accacccgct tgacacctag ggaattcctt gggttttata cgggtcgcaa
1001 gttggagaga taccagaagg ctgttgagtc gttagagatg catcccgtga
1051 gggaaaagga tgcctggctt agcacgttcg tgaaggctga aaaattgaat
1101 atcacagcca aacccgaccc cgctccacgg gtgatacaac ctagggatcc
1151 taggtataat gtggaggtgg ggcgcttttt gcgacacagt gaggaaatgt
1201 tgttcaaggc cattaataaa acatttggcg gaaggactat tttcaagggc
1251 ctcagctctg atcaagctgg ggaggagttt aaaacgctct gggattcatt
1301 caaggatcca gtcggcattg gtatggatgc ttctagattt gaccaacaca
1351 tatctaaaga tgctcttgag tttgagcaca agatgtggct tagcatgttc
1401 cctaaaagtg agcgtgcaga gttagctcga ttgttgagtt ggcagattaa
1451 taatagaggc ctagcccggt gtccggatgg ggagattaga tacagagtgg
1501 aagggtgtag aatgtctggg gacatgaata cctctagcgg aaattgttac
1551 atcatgtgtg caacagtgca taattggtgt gataatatca aacatattaa
1601 gcatttcaga cttgccaata atggtgacga ctgcatgctg gttgttgaac
1651 gcagtgatga gaagaaagtc cgtaatgggc taattgagta ctatgcaaca
1701 cttgggttta cgatgaaggt tgagcccaca gtggatgtat tggaaaggtt
1751 agagttttgc cagacaagac ctgttttagt ggatggcaag taccgaatgg
1801 tgcgaaacct tcatcagagc atgtctaaag atctacactc attgcatgac
1851 cttgatagta gtgccgcgcg taacgcatgg gttacagccg ttggaactgg
1901 gggaaggtgt atgaatgatg gggtgcctgt tctcaaagaa tttttcaaac
1951 agtttccaga ttataatttg gaagtcaaga aaggttctga tatggcacag
2001 aagttgagag atgattggaa gtataagttc aataggactg ctgcttttca
2051 ggatctcatc cccacccagg aatcacgtta ctccttttgg cttgcgttcg
2101 ggttgttacc tgatgaacaa attgccctgg aaaatggctt ctcccctttg
2151 aagatggaga tagttaatga gcagatccag gaggagacat ctctcctcca
2201 gttttctggg gcatgaaaac tcaccaattt caccttaaga tcgagtctag
2251 atggaaaata cagaaaatgt ccgtagtggg agaaaccaac gagagtatag
2301 taaggagagg cagcaggagg gtggctataa agaagttagc aaagctgccg
2351 tgcgcaaaga aggtgatgtt aagcaggaca tgggtccttc agtttcaatg
2401 acggtggtgg gtgagaaagt tgaattcacc caacattttc atttttaatg
2451 gcttacatta ttgttcatca acgtgatcca tttccccttc taggggtttg
2501 gatcattgtt atcatcattg tcgcagttat tggtttattg aaccaaagcc
2551 ctcctgaaag accttaccaa actttcaaag aagataattc taagattcaa
2601 tacattacaa tcggaggatc gaccactaca aaagtgtcta ctagttaata
2651 tgcctaagcg aggaagagtt ggattggctg aatcttttca gtccaagaca
2701 aagaagcaga aggagaatga atacaacgcg tttcagagag agaaaatgga
2751 acgagctctg gcgaataatg cccgcgcagc accaaagagt tctgggatga
2801 ctttccgccc cttaactgtt ccggttgctg ggtctgttat ctatagcagg
2851 ccacgcgtgc cacaggtccg caccaaccag atgtccactt ttgtggtcaa
2901 tactgagttg gttgctaata ttacattggc agctgcggga gcttttagtt
2951 tcacaacaca accgttgatt cctagttttg gatcttggtt agcaaatatc
3001 gcggatctct attctaaatg gagatggata tcatgttccg ttgtgtatat
3051 accaaaatgt cctacttcta ctcaaggaag tgtggtcatg gcgatagtat
3101 acgacgcaca agatactgtt ccaactacac gtacacaagt ttcacaatgc
3151 tatcaatcca tcacattccc tccatatgct ggatacggag gagcctctgc
3201 actgaaccat aagggttctg gtggtgaatc gttggtgtcc acgttggata
3251 ccaatagagt ggataaacga tggtacagca ccatcggtaa cgctgctttt
3301 actgctctca catcaattga caagaatcag ttctgtccag ccacagctat
3351 tattgctggg gatggaggac ctgctgctgc cactgctgtc ggagatattt
3401 tcatgcgata cgacatcgag ttcattgaac cggtcaatcc ctccatcaat
3451 gtttaattgc tttcatagat ccgtcttccg ggagacgtta agaagacacc
3501 cgataaaaat agtaagtaga gttgtggcgt gacaacccac aactgcatct
3551 ctttgcttat ctaattacaa tatatgttga cgtacaagcc ggatcctggg
3601 aaacaggttt aacgggctca ctgtggtggt gggccgtcga tacacttgta
3651 tgtgccccaa tattggttgt cgataagcgt cctgacatgg ctccatgcaa
3701 cagcatgggg gggtccagag tcagtcccct ctttatttac ctagagatct
3751 ctctaggaac cc