Sequence of DPV Rice stripe virus

Rice stripe virus genomic RNA, segment 4, complete sequence.

ACC No: D01039

Dated: 2007-08-01 | Length: 2137 | CRC: -1036841703

                
ID   D01039; SV 1; linear; genomic RNA; STD; VRL; 2137 BP.
XX
AC   D01039;
XX
DT   05-AUG-1992 (Rel. 33, Created)
DT   01-AUG-2007 (Rel. 92, Last updated, Version 10)
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DE   Rice stripe virus genomic RNA, segment 4, complete sequence.
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KW   .
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-2137
RX   PUBMED; 2374003.
RA   Kakutani T., Hayano Y., Hayashi T., Minobe Y.;
RT   "Ambisense segment 4 of rice stripe virus: possible evolutionary
RT   relationship with phleboviruses and uukuviruses (Bunyaviridae)";
RL   J. Gen. Virol. 71:1427-1432(1990).
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CC   Possible evolutionary relationship with pheboviruses and
CC   uukuviruses was discussed in .
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2137
FT                   /organism="Rice stripe virus"
FT                   /segment="4"
FT                   /mol_type="genomic RNA"
FT                   /note="ambisense segment"
FT                   /db_xref="taxon:12331"
FT   CDS             55. .591
FT                   /codon_start=1
FT                   /note="open reading frame; major non-structural protein"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q01209"
FT                   /protein_id="BAA00846.1"
FT                   /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHITEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1226. .2086)
FT                   /codon_start=1
FT                   /note="open reading frame"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/Swiss-Prot:P34961"
FT                   /protein_id="BAA00847.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRRATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2137 BP; 685 A; 444 C; 398 G; 610 T; 0 other;

d01039 Length: 2137  01-AUG-2007  Type: N  Check: 6059  ..

       1  acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
      51  gaagatgcaa gacgtacaaa ggacagtaga agtttctgtt ggtcctattg
     101  taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagc
     151  gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
     201  tactaagaag ctaatactca aaggctgtgt ttacatagca tatcatcacc
     251  ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataacagag
     301  ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa
     351  tgctctcata gacattggtc tgtttttcaa catgttgcaa ccctctttgg
     401  gcggttggat aaccaagaat tttcttagac accctaatag gatgtctaag
     451  gaccagatta aattgctcct ggatcagatt atcaagatgg ctaaggctga
     501  gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
     551  attttgaatc aatcatccaa cctcttctac acaagacata gtttattgca
     601  tatcacattt tccaccaacg agagcttgaa ctccagaatt ggagccagtt
     651  tgggttgacc ttcttgtatg aaaatacagg tatattatag tttaaacaat
     701  ttatatgatg tttgttcact taagcttaac agtttgtaaa taattgtgtg
     751  tgattgagcg tgtgtgtata tatgtattaa tatgtaactg tacacaggtg
     801  tgcagatgca aacacctgaa acaaacaaac aaatatatac ctatctaatc
     851  atatacatgc ttatgagtct tggctcctct acatacacat atacaagaac
     901  cattgcaaaa atactaataa ctttgctttt acaatatcaa aaccaaaaac
     951  tgaaatacca aaaacatgag aaaatagaaa atcaaaaaca atgaatggtg
    1001  ctaagcacca catccggatg tggcgtagca ccattttcat aacattagtc
    1051  tataacctac ttgtggcaaa aacacccata tgcatgaagt gcatagcact
    1101  ctcttatgga ttgaccacta taattacgtg aatgcatagc attctcttgg
    1151  aaaaaagcag agcagaacag accacatcaa ggcgtagcac tagatgctag
    1201  catactctgg aactggttat ctcacctaca tgatgacaga aacttcagat
    1251  tttgatttct ttgtgatggg tatcttcttt ggctgcttca ccacaccgaa
    1301  ctccttctca gtgtctagct cagggaagct cttgctggtg aaagcacctc
    1351  caacagcttt ctgaacaaca ttagtcgtga aattactgaa gctggacaaa
    1401  tggtttattg ccttatcttc tagtggttca aattcaaaca tcacagtgtc
    1451  attggtcttc atggacactg gcagatcagt cctttcaatt ccccagaacc
    1501  aaagagttct agagatgaca cagttctgca ctgagctgtc atcaacagat
    1551  acggacactt gaagattatg cttatcctcc aaagccagaa aattcgctag
    1601  agaacccaag acagcaaaat tcttgctaat tgggtagcga acctctacct
    1651  caacttgatc tgaggagttc acataggact tgtctattat gcggagggta
    1701  gttattccac tagctctacc cttgattcca atccagacca tagcaaaagt
    1751  tgccactcta aagaatggat aatgggtgag aggttgatga aaccaatatg
    1801  gatcaacaag tatgttgaaa gttgctctcc tatgggcctt cacagaatag
    1851  tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa
    1901  gctgaagggt tccaatccaa gcattgtggc agcttgatca atcgtaaccc
    1951  taccctggtt cagaggcctc ttggagagag ctaaagattt cctattctta
    2001  ttatcaactc tcttttggga ctcctcacta aggtcatcat agagtacctt
    2051  actttttgaa gtggacaaaa gtcgagacaa agccataatt aaagtatata
    2101  ttagcttaat ctcaaaagat atgccctgac tttgtgt