Sequence of DPV Rice stripe virus
Rice stripe virus genomic RNA, ambisense genes in segment 3.
ACC No: D01094
Dated: 2007-12-07 | Length: 2475 | CRC: 355769555
ID D01094; SV 1; linear; genomic RNA; STD; VRL; 2475 BP.
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AC D01094;
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DT 05-AUG-1992 (Rel. 33, Created)
DT 07-DEC-2007 (Rel. 94, Last updated, Version 6)
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DE Rice stripe virus genomic RNA, ambisense genes in segment 3.
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KW ambisene gene; nucleocapsid protein.
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2475
RX PUBMED; 1993885.
RA Kakutani T., Hayano Y., Hayashi T., Minobe Y.;
RT "Ambisense segment 3 of rice stripe virus: the first instance of a virus
RT containing two ambisense segments";
RL J. Gen. Virol. 72:465-468(1991).
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CC Data kindly submitted in computer readable form by:
CC Tetsuji Kakutani
CC National Institute of Agrobiological Resources
CC 2-1-2 Kannondai, Tsukuba
CC Ibaraki 305
CC Japan
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FH Key Location/Qualifiers
FH
FT source 1. .2475
FT /organism="Rice stripe virus"
FT /segment="3"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /note="ORF"
FT /db_xref="InterPro:IPR007974"
FT /db_xref="UniProtKB/Swiss-Prot:Q01210"
FT /protein_id="BAA00878.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALESSPGSSPAVL"
FT CDS complement(1415. .2383)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /db_xref="GOA:P68560"
FT /db_xref="InterPro:IPR008864"
FT /db_xref="UniProtKB/Swiss-Prot:P68560"
FT /protein_id="BAA00879.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCSTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLSDKKKEEGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTATEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2475 BP; 755 A; 523 C; 430 G; 767 T; 0 other;
d01094 Length: 2475 07-DEC-2007 Type: N Check: 9222 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcatca
151 actgtgatga tgttcattgt tcttcaagag ccttatgtta tatatatgac
201 atccattcat ctaggcaccc ctccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctctttc ttaaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctaccataa tgatgtcatc ctcttatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttccccc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgta
651 gattctagtg cactagaatc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaag aaaaaagaga aaaaagaaaa gaaaacaaat aatcaaaaaa
751 acaaaaaaat cttaaaaatg aaaaacaaaa aaactaaaaa actaaaaaaa
801 ctaaaaaaca tcatgatcta aaaatacctg cacaccactg gttgtctagt
851 gggctctagt tggtagagaa agctatgctt ttgcctaaag ccatgattag
901 ccaatcctta aaatgtgcta agcacattat ccgaagatgt ctcggatgtt
951 tttttaccta acctaatttt tttgtttttt catataattt tttgattttt
1001 ttgtatttta tatacatatt tttgattttt tgattttttt gttttttaat
1051 atgttttctt ctaattacta cagtaatata tttaattata catgtactta
1101 aaatatatag tatgcattat aaaatagagc aatataataa agctagtatt
1151 actatattac agacatataa ctaaatattt agatagactt atcaaactaa
1201 agactctact ggagagtgag caataataat ggcaatacat cacacacaaa
1251 acccaaaacc acacagacaa agtaacttat agaatataat taaaaactaa
1301 tatatactta ttaaatatac atattaactt acacttaaag gaacaacaca
1351 ctgtttgatg acatgcgtct tccagggaga tatgagaccc cccacaacta
1401 ctgacttgtt cagtctagtc atctgcacct tctgcctcat cctcgaaaaa
1451 ctctttcacc agcccgctga cttctgttgc tgtctttgaa gtgttctcag
1501 caaggatctt catcagcttg ctctgttgag ccaagtacag ccttgtctgg
1551 ttcccataag tgctgattgt attgacagac ataccagcca gcgcatcgaa
1601 gatagtggtc ttcactttcc cattggtgat gaattcatct aagaccttct
1651 tcctgccttc ttccttcttc ttgtcagaca ggttctttga cttgcatgtg
1701 atgaccagga gaccagttgt gtacttcatc atgtctatgt cttttgtcag
1751 accacgctcc ttcttcttac cctctggcat ggtcttttta gttatttgga
1801 aggagtgaat gatgtgcaca acaaacaaaa tgtgacttag ggagtgagtt
1851 gagcagtaag gagctgtttc actctccagt ttgatatatt gtggaacata
1901 gtcccacagt aagttgtcac atcctgtcag tcccaggtca gaagagtcca
1951 cagccatctt aacaccagaa atttgtctca caacttcatg tgagacattt
2001 gggaatagct gagccaatct tcctagtgtg atagcattgg catttgttcc
2051 caccgaggac actatcccat acctcgacac caaggtcgaa gcctctgtgc
2101 ttccagccgc cactttcact ttcttagtga catctctcac aaagccagtg
2151 cctcttacat atctcatagt gatgcacata gtcatatcct tggccagtgt
2201 gtcaccacct ttgtccttca atatgccaat cagagttgca gcatcatagc
2251 ctgcatactc tatctgacca gcaaaggtca caacatcagc tttatgagca
2301 gtcaggtaag acaacgcatc tttggagatg tcgttgattg ccttctgcaa
2351 atcagctaga gtggctggct tgttggtgcc cattgtagca agaggtactg
2401 gaggaatggt tgcggcttag atgaaatttg gaatgtaaaa gcaaaatcga
2451 aaattttatt acccagactt tgtgt