Sequence of DPV Rice stripe virus
Rice stripe virus RNA 4, complete sequence.
ACC No: D10979
Dated: 2008-02-16 | Length: 2157 | CRC: -1667279498
ID D10979; SV 1; linear; genomic RNA; STD; VRL; 2157 BP.
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AC D10979; D01164;
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DT 08-JUL-1992 (Rel. 32, Created)
DT 16-FEB-2008 (Rel. 94, Last updated, Version 8)
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DE Rice stripe virus RNA 4, complete sequence.
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KW RNA 4; S protein; stripe disease specific protein.
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2157
RA Zhu Y.;
RT ;
RL Submitted (09-SEP-1991) to the EMBL/GenBank/DDBJ databases.
RL Contact:Yafeng Zhu c/o MCC Research Center, Plantech Research Institute;
RL 1000 Kamoshida-cho, Aoba-ku, Yokohama, Kanagawa 227, Japan
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RN [2]
RP 1-2157
RX PUBMED; 1588328.
RA Zhu Y., Hayakawa T., Toriyama S.;
RT "Complete nucleotide sequence of RNA4 of rice stripe virus isolate T, and
RT comparison with another isolate and with maize stripe virus";
RL J. Gen. Virol. 73:1309-1312(1992).
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FH Key Location/Qualifiers
FH
FT source 1. .2157
FT /organism="Rice stripe virus"
FT /segment="4"
FT /isolate="T"
FT /mol_type="genomic RNA"
FT /clone_lib="pUC19"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="20K protein"
FT /note="putative S protein (stripe disease-specific
FT protein)"
FT /db_xref="InterPro:IPR006960"
FT /db_xref="UniProtKB/Swiss-Prot:Q00844"
FT /protein_id="BAA01753.1"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT stem_loop 918. .953
FT stem_loop 1010. .1055
FT CDS complement(1246. .2106)
FT /codon_start=1
FT /product="32K protein"
FT /db_xref="InterPro:IPR004980"
FT /db_xref="UniProtKB/Swiss-Prot:Q00847"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT /protein_id="BAA01754.1"
FT /translation="MALSRLLSTLKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVETFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2157 BP; 694 A; 440 C; 398 G; 625 T; 0 other;
d10979 Length: 2157 16-FEB-2008 Type: N Check: 5598 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcctga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaaaaag ctaatactca aaggctgtgt ttacatagca tatcatcacc
251 ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
301 ttttgtcact cattcctatc acaccttcta ggaggtgaag atgatgacaa
351 tgctcttata gacattggtc tgtttttcaa catgttgcaa ccttctttgg
401 gcggttggat aaccaagaat tttcttagac accctaatag gatgtctaag
451 gaccaaatta aaatgctcct ggatcagatc atcaagatgg ctaaggctga
501 gagctcagac acagaagagt atgaaaaagt gtggaagaag atgccaactt
551 attttgaatc aattatccaa cctcttcttc ataaaacata gtttatttca
601 tatcacattt tccacccacg agtgctagca ttatagaagt ggagctagtt
651 tgggttgacc ttcttgtatg aaaatacgag tatactatag tctaaacaat
701 atacatgatg tttttccact taagcttgac agtttgtaaa taattgtgtg
751 tgattgtgcg tgtgtgtatg tatgttaatg tataactgtg cataggtgtg
801 tagatataaa cactagaagc aattaaattg atatattcct atcaactcat
851 atacatactt gtgagtctta gctcctctat atacacacat agaaacatga
901 gagcattata caagacccat tgcaaaaata ctaataactt agtttttaca
951 atgtcaaaac taaaaactga aataccaaaa acatgagaaa atagaaaatc
1001 aaaaacaatg aatggtgcta agcaccacat ccggatgtgg tgcgtagcac
1051 cattttcata acattaatct ataacctact tgtagcaaaa acacccatat
1101 gcatgaagtg catagcactc tcttatgggt tgactactat gattacgtga
1151 atgcatagca ttctcctgga aaaaagcaga gcagaacaaa ccacatcaag
1201 tgcatagcac aagatgttag catactccgg aactggttat ctcacctaca
1251 tgatgacaga aacttcagat tttgatttct ttgtgatggg tatcttcttt
1301 ggctgcttca ccacaccgaa ctccttctca gtgtctagct cagggaagct
1351 cttgctggtg aaagcacctc caacagcttt ctgaacaaca ttagtcgtaa
1401 aattactaaa gctggacaaa tggtttatag ccttatcttc tagtggttca
1451 aattcaaaca tcacagtgtc attggtcttc atggacactg gcagatcagt
1501 cctctcaatc ccccagaacc aaagagttct agagatgaca cagttctgca
1551 ctgagctgtc atcaacagat acggacactt gaagattatg cttatcctcc
1601 aaagccagaa aattcgccag agaacccaag acagcaaaat tcttgctaat
1651 tgggtagcga acctctacct caacttgatc tgaggggttc acataggact
1701 tgtctattat gcggagggta gttattccac tagctctacc cttaattcca
1751 atccagacca tagcaaaagt ttccactcta aagaatgggt aatgggtgag
1801 aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc
1851 tatgggcctt cacagaatag tcctgtttgg ctatgaacat atcatacttg
1901 ttcaccttga catctgagaa gctgaagggt tccaatccaa gcattgtggc
1951 agcttggtca attgtaaccc taccctggtt cagaggcctt ttggagagag
2001 ctagagattt cctattctta ttatcaactc tcttttggga ctcctcacta
2051 aggtcatcat agagtacctt actttttaaa gtggacaaaa gtcgagacaa
2101 agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac
2151 tttgtgt