Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus (ISOLATE P-PAV) genomic RNA, complete sequence.
ACC No: D11032
Dated: 2003-07-07 | Length: 5179 | CRC: -597668339
!!NA_SEQUENCE 1.0
ID BYDPAV standard; RNA; VRL; 5179 BP.
XX
AC D11032; D01214;
XX
SV D11032.1
XX
DT 07-MAY-1992 (Rel. 31, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 13)
XX
DE Barley yellow dwarf virus (ISOLATE P-PAV) genomic RNA, complete sequence.
XX
KW .
XX
OS Barley yellow dwarf virus (ISOLATE P-PAV)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; Barley yellow dwarf virus - PAV.
XX
RN [1]
RX MEDLINE; 91108372.
RX PUBMED; 2273382.
RA Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.;
RT "Nucleotide sequences of coat protein genes for three isolates of barley
RT yellow dwarf virus and their relationships to other luteovirus coat protein
RT sequences";
RL J. Gen. Virol. 71:2791-2799(1990).
XX
RN [2]
RP 1-5179
RX MEDLINE; 92166764.
RX PUBMED; 1538199.
RA Ueng P.P., Vincent J.R., Kawata E.E., Lei C., Lister R.M., Larkins B.A.;
RT "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV
RT isolates of barley yellow dwarf virus";
RL J. Gen. Virol. 73:487-492(1992).
XX
DR GOA; P29045.
DR GOA; Q00011.
DR GOA; Q65876.
DR GOA; Q65877.
DR SPTREMBL; Q65876; Q65876.
DR SPTREMBL; Q65877; Q65877.
DR SPTREMBL; Q65878; Q65878.
DR SWISS-PROT; P29045; RRPO_BYDVR.
DR SWISS-PROT; P29047; VPG_BYDVR.
DR SWISS-PROT; Q00011; COAT_BYDVR.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5179
FT /db_xref="taxon:31724"
FT /mol_type="genomic RNA"
FT /organism="Barley yellow dwarf virus (ISOLATE P-PAV)"
FT /isolate="P-PAV"
FT /serotype="PAV"
FT CDS 142. .1161
FT /codon_start=1
FT /db_xref="GOA:P29045"
FT /db_xref="SWISS-PROT:P29045"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF1"
FT /protein_id="BAA01785.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARREPLDVLDSVGF"
FT CDS <1146. .2744
FT /codon_start=1
FT /db_xref="GOA:Q65876"
FT /db_xref="SPTREMBL:Q65876"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF2"
FT /protein_id="BAA01786.1"
FT /translation="LCGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLS
FT QTHLGLVYKAPNASLHNALVAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIE
FT EVGYCRTYPAQLLANSYSAGKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDI
FT APRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQK
FT FACPVAIGVDASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKM
FT LRFKVRGHRMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKL
FT FDGMYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLS
FT MLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDE
FT RLQGRRTYNETPITNHSRMSYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQ
FT SILLSIPENHSQIEY"
FT CDS 2858. .3460
FT /citation=[1]
FT /codon_start=1
FT /db_xref="GOA:Q00011"
FT /db_xref="SWISS-PROT:Q00011"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORF3"
FT /product="viral coat protein"
FT /protein_id="BAA01787.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTAAKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /citation=[1]
FT /codon_start=1
FT /db_xref="SWISS-PROT:P29047"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF4"
FT /protein_id="BAA01788.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTPPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
FT CDS <3461. .4810
FT /codon_start=1
FT /db_xref="GOA:Q65877"
FT /db_xref="SPTREMBL:Q65877"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF5"
FT /protein_id="BAA01789.1"
FT /translation="VDSSTSEPQPAPEPTPTPQPTPAPQPAPEPTPAPVPKRFFEYIGT
FT PTGTISTRENSDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAAFVYPVPE
FT GSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTW
FT RPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGTDACFYLMAPKTMKTDKYNYVVSYG
FT GYTNKRMEFGTISVTCDESDVEAERITRHAETPIRFKHILVSEQYEQPLPTIIDQCLCD
FT VQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATAEIPDAEEDVLPSKEQLSSKPVDTS
FT GNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLREAAKTPSTLLYEKTPKKSNNFLTR
FT FVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRKSLGLTAAKEYKAQFQ"
FT CDS 4917. .5105
FT /codon_start=1
FT /db_xref="SPTREMBL:Q65878"
FT /product="ORF6"
FT /protein_id="BAA01790.1"
FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSPPFFCLSKN
FT LSVCARETQKYRGASAQ"
XX
SQ Sequence 5179 BP; 1538 A; 1245 C; 1253 G; 1143 T; 0 other;
D11032 Length: 5179 July 15, 2003 09:13 Type: N Check: 8899 ..
1 gtgaagattg accatctcac aaaagctgtt acgctgcttg taacacacta
51 cacactcgtt ttgtgttcga gaagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctatcc ccaccgccaa catgtttttc
151 gaaatactta taggagctag cgctaaggcg gtcaaagact tcatcagcca
201 ttgttactct cgtttgaaat ctatatatta ttctttcaaa cgatggctga
251 tggagatatc tgggcagttt aaggcccacg acgcctttgt caacatgtgc
301 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga
351 gtttgccgag agggaggatg aggtggaaga ggcaaggagc ctcttgaaac
401 tgctggttgc ccaaaaatct aaaactgggg taaccgaggc ttggaccgac
451 ttctttacga agtcgagagg tggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gagctagaag ctaagagcga gaagctcgaa aagcttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaagaaata cattaaggaa
601 aaaggccgcg gcttcatcaa ctgttggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg
701 ccaagatcgg agcagaaatg ttcgcccccg ttgacgtgca agacctctac
751 agtttcacag aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagagaga aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc tatcaaggac accgctgaag ctagggacgc cgcctccact
901 tggataacag agacagttaa gctgaagaat tctacgctta atgccgatga
951 attgtctctg gccaccatcg cccgctacgt cgaaaacgta ggggacaaat
1001 tcaaactcga cattgctagc aagacatatc taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaactaa caaggacatc aaattgaaga tggtgctgca
1101 gagtcctgaa gcacgtgcca ggcgggaacc gttggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa tgcgcttgta gcagtggaga
1351 gaagagtttt cacagtagga aagggggaca aagcaatcta ccccccccgc
1401 ccagagcatg acattttcac tgatacaatg gattacttcc aaaaatccat
1451 tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agagccatgt atcacaaagc cattgcatca
1551 ttgaggactg tcccttatca tcagaaggat gctaatgtgc aagctttcct
1601 gaagaaggaa aaacactgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aacatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgctatcgat agtgtgttcg gatcccccac
1751 tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc ttcggagaca gcgaactggc tcttgcactt gaacatcaaa
1951 tcaccaacaa catcaagatg tttgttgaag ataaaatgct taggttcaag
2001 gtaaggggcc acagaatgtc cggtgacatt aataccagca tgggaaataa
2051 gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg
2101 aagctgaact ttgtaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaga agctctttga tggcatgtac gaccatttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggag caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactactttc cataccggaa aaccactcac aaatcgaata ttaattacca
2751 gatcttagct gggtttggga tagggtttat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcacaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt cgacaacctt aaagccaact cctccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac
3301 cgccgcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg
3351 aatcaacgat agaccagttt tggatgctct acaaggccaa tggaaccacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacatcgga accgcaacct gcaccagaac
3501 ctacaccaac cccacagcca acgccagctc cacagcccgc acccgaaccg
3551 actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac
3601 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc
3651 tcggtgggca gtcgatgcag tatatagaga atgagaagtg tgaaacaaag
3701 gtcattgact ccttctggag cactaacaac aacgtgtctg cacaggcagc
3751 cttcgtttac ccagtgccag aaggatcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacataggag gcaacgagga tggttattgg
3851 attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg
3901 caactacaaa ggatgcagtt tcaagaactt cttggcaacc aacacttgga
3951 gaccaggcca taaggatctc aagttgaatg attgccagtt cacagatgga
4001 caaatagttg agagggatgc cgtgatgtct ttccatgtag aagcaacagg
4051 tactgacgcc tgtttctatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa acggatggaa
4151 tttggtacca tatctgtgac ctgtgatgaa tccgatgttg aggcagaacg
4201 cataacaagg catgctgaaa cacccatacg tttcaaacac attcttgtgt
4251 ccgaacagta tgagcaacct ctacccacca taatcgatca atgcttgtgt
4301 gatgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc actcatggag tatgaagctg
4401 caacagccga aattccagat gctgaagagg atgttttgcc ctccaaggaa
4451 cagttgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc
4501 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg
4551 aagacgtgcc accaattgcg cggcaaaaac tacgtgaagc cgcaaaaaca
4601 ccctccacac tactctacga gaaaactccc aagaagagca acaatttctt
4651 gactcgtttt gtggaggcga ataggtcccc tacaactcca gctgccccaa
4701 cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc ggagtacact
4751 agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcgtaagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgtgtt tggccgatgg atgacctcca cgttatcgcc gtttgtattt
4951 ttgctctaac tgtgctgaca gggttaggcg cggtgatcgg ctgttgtgcc
5001 ggttgccttc tccctccccc ctcccctccg ttcttctgtt taagcaaaaa
5051 tctctcggtc tgtgcgagag aaactcaaaa atatcgggga gcttcggctc
5101 agtgagggga ttaacgaccc ccagtaaagg ctggtcttgg cggacttgaa
5151 taacccgcta taagacgaag tggtaaccg