Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus genes for 3a protein, coat protein, complete cds.
ACC No: D12499
Dated: 2008-02-22 | Length: 2217 | CRC: 1215883301
ID D12499; SV 1; linear; genomic RNA; STD; VRL; 2217 BP.
XX
AC D12499; D01201;
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DT 14-JUL-1992 (Rel. 32, Created)
DT 22-FEB-2008 (Rel. 94, Last updated, Version 9)
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DE Cucumber mosaic virus genes for 3a protein, coat protein, complete cds.
XX
KW .
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-2217
RA Takanami Y.;
RT ;
RL Submitted (04-OCT-1991) to the EMBL/GenBank/DDBJ databases.
RL Contact:Yoichi Takanami Kyushu University, Deapertment of Agriculture;
RL 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812, Japan
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RN [2]
RA Nitta N., Masuta C., Kuwata S., Takanami Y.;
RT "Comparative studies on the nucleotide sequence of cucumber mosaic virus
RT RNA3 between Y strain and Q strain";
RL Nippon Shokubutsu Byori Gakkaiho 54:516-522(1988).
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CC Yoichi Takanami
CC Life Science Research Laboratory
CC Japan Tobacco Inc.
CC 6-2, Umegaoka, Midori-ku
CC Yokohama 227
CC Japan
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FH Key Location/Qualifiers
FH
FT source 1. .2217
FT /organism="Cucumber mosaic virus"
FT /segment="3"
FT /strain="Y"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12305"
FT CDS 121. .960
FT /codon_start=1
FT /product="3a protein"
FT /note="cell to cell movement"
FT /db_xref="GOA:P18028"
FT /db_xref="InterPro:IPR000603"
FT /db_xref="UniProtKB/Swiss-Prot:P18028"
FT /protein_id="BAA02060.1"
FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT CDS 1260. .1916
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:P18027"
FT /db_xref="UniProtKB/Swiss-Prot:P18027"
FT /protein_id="BAA02061.1"
FT /translation="MDKSESTSAGRNRRRRLRRGSRSASSSSDANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVSASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ Sequence 2217 BP; 520 A; 518 C; 527 G; 652 T; 0 other;
d12499 Length: 2217 22-FEB-2008 Type: N Check: 5495 ..
1 gtaatctaac cacctgtgtg tgtgtgtgtg tgtatcgagt cgtgttgtcc
51 gcacatttga gtcgtgttgt ccgcacatat atatttattt cgttgtacag
101 tgtgttagat ttcccgaggc atggctttcc aaggtaccag taggacttta
151 actcaacagt cctcagcggc tacgtctgac gatcttcaaa agatattatt
201 tagccctgaa gccattaaga aaatggctac tgagtgtgac ctaggccggc
251 atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc
301 gaagtaaccc acggtcgtat tgcttccttc tttaaatctg gatatgatgt
351 tggtgaattg tgctcaaaag gatacatgag cgtccctcaa gtgttatgtg
401 ctgttactcg aacagtttcc actgatgctg aagggtcctt gagaatttac
451 ttagctgatc taggtgacaa ggagttatct cccatagatg ggcagtgcgt
501 ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc cagccgacgt
551 atgattgtcc tatggaaaca gttgggaatc gtaagcggtg ttttgctgtt
601 gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt
651 gtgtagtaat tggcaagcaa ggttttcatc taagaataac aactacactc
701 atatcgcagc tgggaagact ctagtactgc ctttcaacag attagctgag
751 caaacaaaac cgtcagctgt cgctcgcctg ttgaagtcgc aactgaacaa
801 cattgaatct tcgcaatatt tgttaacgaa cgcgaagatt aatcagaatg
851 cgcgcagtga gtccgaggaa ttaaatgttg agagccctcc cgccgcaatc
901 gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa
951 cggtctttag cactttggtg cgtattagta tataagtatt tgtgagtctt
1001 acataatact atatctatag tgtcctgtgt gagttgatac agtagacatc
1051 tgtgacgcga tgccgtgttg agaagggaac acatctggtt ttagtaagcc
1101 tacatcatag ttttgaggtt caattcctct tactccctgt tgagccccct
1151 tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact
1201 atatagagag tgtgtgtgtg ctgtgttttc tcttttgtgt cgtagaattg
1251 agtcgagtca tggacaaatc tgaatcaacc agtgctggtc gtaaccgtcg
1301 acgtcgtttg cgtcgtggtt cccgctccgc ctcctcctcc tcggatgcta
1351 actttagagt cttgtcgcag cagctttcgc gacttaacaa gacgttagca
1401 gctggtcgtc caactattaa ccacccaacc tttgtaggga gtgaacgctg
1451 taaacctggg tacacgttca catctattac cctaaagcca ccaaaaatag
1501 accgtgggtc ttattatggt aaaaggttgt tattacctga ttcagtcacg
1551 gaatatgata agaagcttgt ttcgcgcatt caaattcgag ttaatccttt
1601 gccgaaattt gattctaccg tgtgggtgac agtccgtaaa gtttctgcct
1651 cctcggactt atccgttgcc gccatctctg ctatgttcgc ggacggagcc
1701 tcaccggtac tggtttatca gtatgctgca tctggagtcc aagctaacaa
1751 caaattgttg tatgatcttt cggcgatgcg cgctgatata ggcgacatga
1801 gaaagtacgc cgtcctcgtg tattcaaaag acgatgcgct cgagacggac
1851 gagttagtac ttcatgttga cgtcgagcac caacgcattc ccacatctgg
1901 agtgctccca gtctgattcc gtgttcccag aatcctccct ccgatctctg
1951 tggcgggagc tgagttggca gttctgctat aaactgtctg aagtcactaa
2001 acgttttacg gtgaacgggt tgtccatcca gcttacggct aaaatggtca
2051 gtcgtggaga aatctacgcc agcagattta caaatctctg aggcgccttt
2101 gaaaccatct cctaggtttc ttcggaagga cttcggtccg tgtacctcta
2151 gcacaacgtg ctagtttcag ggtacgggtg cccccccacc ttcgtggggg
2201 cctccaaaag gagacca