Sequence of DPV Strawberry mild yellow edge virus
Strawberry mild yellow edge virus genes for 25K protein, 13K protein, 150K protein, coat protein, 11K protein, 8K protein, complete cds.
ACC No: D12517
Dated: 2008-01-18 | Length: 5966 | CRC: 537313939
ID D12517; SV 1; linear; genomic RNA; STD; VRL; 5966 BP.
XX
AC D12517; D01227;
XX
DT 07-JUL-1992 (Rel. 32, Created)
DT 18-JAN-2008 (Rel. 94, Last updated, Version 9)
XX
DE Strawberry mild yellow edge virus genes for 25K protein, 13K protein, 150K
DE protein, coat protein, 11K protein, 8K protein, complete cds.
XX
KW .
XX
OS Strawberry mild yellow edge virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-5966
RA Jelkmann W.;
RT ;
RL Submitted (06-NOV-1991) to the EMBL/GenBank/DDBJ databases.
RL Contact:Wilhelm Jelkmann Institute for Plant Protection in Fruit Crops,
RL Federal Biological Research Centre; Schwabenheimer Strasse 101, Postfach
RL 1264, Dossenheim D-69221, Germany
XX
RN [2]
RX PUBMED; 2191082.
RA Jelkmann W., Martin R.R., Lesemann D., Vetten J.H., Skelton F.;
RT "A new potexvirus associated with strawberry mild yellow edge disease";
RL J. Gen. Virol. 71:1251-1258(1990).
XX
RN [3]
RX PUBMED; 1339469.
RA Jelkmann W., Maiss E., Martin R.R.;
RT "The nucleotide sequence and genome organization of strawberry mild yellow
RT edge-associated potexvirus";
RL J. Gen. Virol. 73:475-479(1992).
XX
CC The molecule which was sequenced is cDNA to dsRNA isolated from
CC SMYEAV diseased plants. The dsRNA represents a replicative form of
CC the viral genomic RNA.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5966
FT /organism="Strawberry mild yellow edge virus"
FT /isolate="MY-18"
FT /mol_type="genomic RNA"
FT /clone="p398, p309, p572, p24, p417, p463, p326, p43, p441"
FT /note="synonym: Strawberry mild yellow edge-associated
FT virus"
FT /db_xref="taxon:12187"
FT CDS 75. .4046
FT /codon_start=1
FT /product="150K protein"
FT /note="motif GDD (known sequence motif for viral RNA
FT polymerases) occurs at position 3660-3668."
FT /db_xref="GOA:P28897"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/Swiss-Prot:P28897"
FT /protein_id="BAA02082.1"
FT /translation="MATRVASVFSSLTDVGIKAALQDEAYKRIKSNLREAEIINPYSVD
FT ARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLNIVGHALPKEPVTFLFLKRGKLRY
FT LSRGRIKDIFQNQEIEPRDVARYEHKTIVQKSLLLNTRVAYISDTLHFLRPRYIIDLFS
FT QNVFLDVLYATVVLPVEASFKHPSQNPAIYTINYNYGGFQYLPGNHGGGAYSHEFEDLD
FT WLKYGKFIYRWVDYRTDPISGKRVGTPKELVVTCQLVESLGANHLFIFKRGDLKTPRVR
FT TFAKDKSVTFPDLFYPEEENANFPVDAELATKLFLYVKTLKTVTSQDVHGKLRQLLRSD
FT ELTRFSPMQLTHMVNYFMVVAHLDSCNDYSMLLGSSVWTQLTAPIQSKLRKLTEFFKGK
FT SSFGKFCAALKWKTATYSLEVVDYVETRRDSFEPHPLDSLPDADDRDVNYDTDVSEDEA
FT DEKPAPKAPTSTPVPDTTPPASPAAPADAEYTQCWAAWDTVIRKHGFKGNQAQFDDDGN
FT LITPIAEIKSLPKDSPRCAPELIKSLQEIARTPTLVEIDSKRSNAFGSDVKNGRIGMIL
FT KKQPNDWRLSFAAKCEHTSRKVHACVIHGAGGSGKSQRLQDWMRSLKKNSRECTVILPT
FT AELRTDWVNKVPKQSLDTFKTWEKGLVQPPNRVVILDDYGKLPAGYPEALCANYPNIEL
FT LILTGDSRQSVHNEHNKQAATASLESNIEFWTQYCRFYVNATHRNVKRLANALGVYGER
FT DEPLKVTCSSHVYDGWPVLAPGLLKAGNLAECGRRAFTYAGCQGLTAPRVQILLDNDTP
FT LCSQRVMYTALSRAVNEIHFVNTGPSGDDFWTKLDCTPFLKTFLELSREIEIPEAKCQE
FT TAPAEATVKTHFPVENPNLVLEPYVEKMAEKFDRELYSKEYGYSNAIQTEDPVIQLFPH
FT QQAKDDTLMWATIDQRLAITTKSENETEFALKKDIGDLLFINYHRAMKLPKNPIPFDKD
FT LWQSCKNEVQKTYLSKDVGSIVNGVARQDPDFPINEIKLFLKSQWVKKVEKLGMVVKPG
FT QTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKANWNFEGLAH
FT SNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSGEG
FT PTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDRTPVPRPSFNKIKDRLGLVSKPL
FT THRQVPGDFATFCGWIITPKGVIKDPLKLYASLQLAIRRGKSHEVALSYAHDAGLAYRL
FT GDDLHSVLTFDEAHAHQCTVRDLVKLNKVEVLRPIWALD"
FT promoter 4048
FT /note="putative subgenomic promoter starts here"
FT CDS 4096. .4785
FT /codon_start=1
FT /transl_except=(pos:4096. .4098,aa:Met)
FT /product="25K protein"
FT /note="ATT codon is a possible initiation codon for 25K
FT protein."
FT /note="thought to be functional in cell-to-cell spread of
FT virus"
FT /db_xref="GOA:Q00846"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/Swiss-Prot:Q00846"
FT /protein_id="BAA02083.2"
FT /translation="MVEFTKRLLLERNFERTNRPITGPIVVHAVAGAGKSSVINTVSLT
FT FQLICWTTLPEEKASFNCLHLRHLDGPAFPGAFVDEYQLADTDLSEAAFLFGDPLQYPG
FT PAAQVPHFVKLFSHRCGLNSASLIRELGIAFEASKLDSVQHLDPYSSDPEGTILAFEPE
FT VQAALASHSLDFLCLDEFRGKQWPVCTLYVSTKNLCDLDRPSVYVALTRHYERLLIMSF
FT DAADTSA"
FT CDS 4763. .5089
FT /codon_start=1
FT /product="13K protein"
FT /db_xref="GOA:Q00842"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/Swiss-Prot:Q00842"
FT /protein_id="BAA02084.1"
FT /translation="MPLTPPPDHSITYRILAVGLCSCCAIYAATRSTLPHTGDNLHSLP
FT YGGKYSDGTKSICYSGPGPTPDIPTHLPALLVLVLVVAIYASSRLDFSVNYRCSCRVHN
FT RSGQ"
FT CDS 5016. .5243
FT /codon_start=1
FT /product="8K protein"
FT /note="thought to be functional in cell-to-cell spread of
FT virus"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/Swiss-Prot:Q00848"
FT /protein_id="BAA02085.1"
FT /translation="MRVLDLILALITAAVVGYTIALVSNSGCYVHFDGRSATTTCPPGP
FT WVESIANGLYTAGLARPHPEPECERRQSSW"
FT CDS 5113. .5841
FT /codon_start=1
FT /product="coat protein"
FT /note="second methionine codon at 5170-5172 possibly could
FT initiate CP synthesis"
FT /db_xref="GOA:P28899"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/Swiss-Prot:P28899"
FT /protein_id="BAA02086.1"
FT /translation="MGDQPRPPVPPAPGSNPLPMGSTPPVLPGRTPNPNANVANQVGDP
FT FRVLTPEELAAPISAASNKVATREQILGIVADLNALGFVGDPALGLFDLAFHCYDIGSS
FT PSAQPVGPSPFGCSRMQVAAVVRNHCTLRQLCMFYAPSVWNKAVRDNRPPGNWSNLQFT
FT PETKFAAFDFFDGVLNPASQEVPLWRQPTPQEIYASATHKDVATYRAASKAHDRISNST
FT LLTKGASRSTPPALLPGPDA"
FT CDS 5408. .5728
FT /codon_start=1
FT /product="11K protein"
FT /db_xref="UniProtKB/TrEMBL:Q88468"
FT /protein_id="BAA02087.1"
FT /translation="MTLALHPLPNRSVLHPSAARACKSPPSFEITALSASSVCSTPQAS
FT GTKQSGTTVPLAIGAISSLHRRPSSLPLISSMVCSIQPAKKSRFGVSPPPRRFMPQPRI
FT RM"
FT polyA_site 5966
XX
SQ Sequence 5966 BP; 1488 A; 1646 C; 1382 G; 1450 T; 0 other;
d12517 Length: 5966 18-JAN-2008 Type: N Check: 753 ..
1 atttatccaa cacactctag accaggccct cctgacgtac acaacaactg
51 cctgccgcag tgcactgtac ctcgatggca actagagtag cgagcgtatt
101 ctcctccctc acggacgttg gaattaaagc ggccttacaa gatgaggcat
151 acaagcgcat aaaatccaac ttacgtgaag ccgaaatcat caacccctac
201 tcggttgatg cccggggtgc tgaagccctg gaagaacttg ccatcatcac
251 gaacccacac tccatcaggc tacataccca tgcagccgca aagagcattg
301 aaaaccagat gctcaacatt gtgggccatg cgctgcctaa ggaaccagtc
351 acattccttt tcctgaagcg cggcaagtta cggtatctct cccgtggaag
401 aatcaaggac attttccaaa atcaggagat cgaaccgcgt gacgtagcta
451 ggtacgagca caagactatt gtacagaagt ctttgctttt aaatactaga
501 gtagcataca ttagtgatac tttacatttc cttagaccta ggtacataat
551 agatttgttt tcccagaatg tctttctcga cgttctatat gctactgtgg
601 tgctgcctgt agaggccagt ttcaagcacc cctcacaaaa ccccgccatc
651 tacacgatca actataatta tggggggttc caatatttac ctgggaacca
701 tggaggcgga gcctactcac atgagttcga agatcttgac tggctcaagt
751 atgggaaatt catctacaga tgggtggatt accgtactga ccccatctcg
801 ggtaaaaggg tcggcacccc gaaagagctt gtggtcacgt gccaacttgt
851 tgagtctctt ggtgccaatc acctcttcat cttcaagaga ggagacttga
901 agactccacg cgtccggacc tttgcaaagg acaaaagcgt gactttcccg
951 gatctgtttt atccggaaga agagaatgcc aacttcccgg tggacgctga
1001 gttagccacc aaactcttcc tgtacgtcaa gaccctcaag actgtcacca
1051 gtcaagatgt acatgggaag ttgcgccaac tgttgaggag tgatgaactc
1101 acccggttca gtccaatgca actgacacac atggtcaact acttcatggt
1151 agtcgcccac ctggacagtt gcaatgatta ctccatgctt ctcggcagta
1201 gtgtatggac tcagctcaca gccccaattc agtctaaact caggaaacta
1251 actgaattct tcaagggcaa gtcctccttc ggcaaattct gtgccgcttt
1301 gaagtggaaa acagccactt actctctgga ggtcgtagac tacgttgaaa
1351 cgcgtaggga ctccttcgaa ccccaccctc tggacagtct tccagacgct
1401 gacgaccggg acgtaaatta tgataccgac gttagtgaag atgaggcgga
1451 tgagaaacct gcgcccaaag cgccgacctc taccccagtt cccgacacaa
1501 ctccacccgc gagcccggca gccccagctg atgccgaata cacacaatgt
1551 tgggctgcct gggacactgt tatcaggaaa cacgggttca agggcaacca
1601 ggcccaattt gatgatgatg ggaatctcat cacccccatt gcagagatca
1651 agtctctgcc gaaagattcc ccgcggtgtg cgcctgaact aattaagagt
1701 ttgcaggaaa tagcgcgtac acccactttg gttgaaatag actccaaaag
1751 gagcaatgct ttcggatccg atgttaagaa tgggcgaatc ggaatgatcc
1801 tgaagaagca gcccaatgat tggcgccttt cttttgctgc aaagtgtgaa
1851 cacacgtcaa ggaaagtgca tgcctgcgtc atccatggtg cgggaggctc
1901 aggaaagtca caacgcctcc aagattggat gaggtctctg aagaaaaatt
1951 ccagagaatg cacagttatc ctcccaactg cagagctgcg aaccgactgg
2001 gttaataaag tacccaagca aagcttggac actttcaaga cttgggaaaa
2051 aggactggtg caaccgccga acagggtagt tatacttgat gattatggga
2101 aattacccgc agggtatcct gaggcccttt gtgccaacta cccgaacatt
2151 gagctcctga tcctgacagg agactccagg cagtcagttc ataacgaaca
2201 caacaagcag gctgccacag catcccttga atccaatatc gagttctgga
2251 cccaatactg ccgtttctac gtaaacgcca ctcaccgcaa tgttaagcgt
2301 ctcgccaacg ccttgggtgt ttacggggaa cgtgatgaac ccctcaaagt
2351 gacctgcagt agtcacgttt atgatggttg gccggtcctg gctcctggcc
2401 ttctcaaagc cggcaacctt gccgaatgtg ggcgccgcgc ctttacatat
2451 gctggctgcc aaggcctcac tgctcctaga gtgcaaattt tgctcgacaa
2501 cgacactccc ctgtgttcac agagagtgat gtatactgca ctctcaaggg
2551 cggtgaatga gatccacttt gtcaacactg gcccgtctgg agatgatttc
2601 tggacaaagt tggactgcac tcccttcttg aaaactttcc tagaactgtc
2651 tagagaaatt gagattcctg aagcgaagtg ccaagagact gctcccgctg
2701 aagcaaccgt gaagactcat ttcccggttg aaaatccaaa tttggtactc
2751 gaaccatacg tcgagaaaat ggccgaaaag ttcgatagag aactgtactc
2801 taaagagtat ggttattcta atgccattca gactgaagac ccggtgattc
2851 agttgttccc acaccagcaa gctaaggatg acaccctgat gtgggccacc
2901 attgatcaaa gactggccat cacgaccaag tctgagaacg aaactgagtt
2951 cgctctcaaa aaggacatcg gggacctgct cttcatcaac taccaccgtg
3001 ccatgaaatt gccaaagaac ccaatccctt tcgacaagga cttgtggcag
3051 tcttgcaaga atgaagtcca aaagacttat ctttcgaagg atgtcggttc
3101 tatagttaac ggtgttgcca ggcaagaccc agactttcca atcaatgaaa
3151 tcaagctctt cctgaaaagt caatgggtca agaaagttga gaaactcggt
3201 atggtagtga aaccgggcca gactatcgca tccttcgctc aagccccggt
3251 gatgttgtac ggtaccatgg cgcgctacat gaggcgcatg cgggaggttt
3301 accagccgtc aaatatcttc attaattgtg agaaaacccc cgctgacttg
3351 gatgagtggg ccaaggccaa ttggaatttc gaaggcctcg ctcactccaa
3401 tgacttcact gcctttgacc agtctcaaga tggagctatg ctacaattcg
3451 aggtcattaa ggcaaagttt cacaacatcc ccagtgacat tatcaacagt
3501 tatgtggaac ttaagaccaa tgccaaggtc tttctcgggg ttttgaagat
3551 catgaggttg tcaggagagg ggcctacttt cgatgcaaac acagagtgct
3601 ccattgcata tcaccataca aaatattggg ttgagcctga tgtcgctcaa
3651 gtgtatgctg gtgatgattc tgcccaggat aggacccccg tacctaggcc
3701 cagcttcaac aagatcaaag acaggctagg gctggtctca aaacctctga
3751 ctcatcggca ggtcccagga gactttgcca cgttttgcgg ctggataata
3801 acgccgaagg gagtgatcaa ggatcctctg aaactctacg cctccctgca
3851 attagctatc cgccgtggaa agtctcatga ggtcgcgctt tcctatgctc
3901 acgacgcagg tctcgcttat cgcctcggcg acgacctgca ctctgtgttg
3951 accttcgatg aggcccatgc tcaccaatgt actgttagag acttggtgaa
4001 gttaaataaa gtagaagtgt taaggcccat ttgggccctt gattaggggt
4051 taagttacca ttctctcgaa gttcaaactg gagcgtccca atactattgt
4101 cgagttcacg aagcgtctgc ttttggaacg caactttgag agaactaacc
4151 gtcccatcac tggccctatt gttgtacatg ctgttgccgg tgctgggaag
4201 tctagtgtca ttaacaccgt gtccctcact tttcagctca tctgctggac
4251 cacgctgcca gaggaaaaag cctccttcaa ctgcctccat ctccgccatc
4301 tcgacggacc cgctttcccg ggagccttcg tagacgagta tcagctcgct
4351 gacaccgatc tatctgaagc tgcgtttctc ttcggagatc cgctacagta
4401 cccgggacct gctgctcaag ttccgcattt tgtgaagctg ttctcccatc
4451 gttgtgggtt gaactctgcc tcgctgatcc gcgaattggg cattgctttt
4501 gaggccagta aactcgattc agtgcagcac ttggacccct actcctctga
4551 tcctgaaggt accattctcg ctttcgagcc tgaggtacaa gctgctcttg
4601 caagccactc cttggatttc ctctgcctgg acgaattccg aggcaaacag
4651 tggccagttt gcaccctgta cgtgtccaca aagaacctct gtgacttaga
4701 cagaccatct gtctatgttg cactaacaag acactacgag cgcctcttga
4751 tcatgagctt cgatgccgct gacacctccg cctgaccata gtattaccta
4801 taggattctt gctgttggcc tttgctcctg ttgtgctatt tacgccgcca
4851 cccgatctac cttgccacac actggtgaca acctgcattc actgccatac
4901 ggagggaagt attccgacgg aaccaaaagc atttgctact ctggtcccgg
4951 acctacccct gacataccta cacatctgcc tgcgttgcta gttttggtct
5001 tagtcgtcgc gatttatgcg agttctagac ttgattttag cgttaattac
5051 cgctgcagtt gtagggtaca caatcgctct ggtcagtaat tctggttgtt
5101 acgtacattt tgatgggaga tcagccacga ccacctgtcc ccccggcccc
5151 tgggtcgaat ccattgccaa tgggctctac accgccggtc ttgcccggcc
5201 gcaccccgaa cccgaatgcg aacgtcgcca atcaagttgg tgaccccttc
5251 cgagtgctca cccccgagga gctcgccgca cccatctccg cagctagtaa
5301 caaggttgcc actcgcgagc agattctcgg cattgtagcg gacttgaacg
5351 ctttgggctt cgtcggagat cccgccttag gcctcttcga cctagccttc
5401 cactgctatg acattggctc ttcaccctct gcccaaccgg tcggtccttc
5451 acccttcggc tgctcgcgca tgcaagtcgc cgccgtcgtt cgaaatcact
5501 gcactctccg ccagctctgt atgttctacg ccccaagcgt ctggaacaaa
5551 gcagtccggg acaaccgtcc ccctggcaat tggagcaatc tccagtttac
5601 accggagacc aagttcgctg cctttgattt cttcgatggt gtgctcaatc
5651 cagccagcca agaagtcccg ctttggcgtc agcccacccc ccaggagatt
5701 tatgcctcag ccacgcataa ggatgtagct acttaccgtg ccgctagtaa
5751 ggcacatgat cgcatttcaa attccacgct cctgactaaa ggagctagta
5801 gatccactcc gcccgcgctc ttgccgggcc ccgatgctta acatcagtgg
5851 aataggctta aaatgggagt ttcttctcac ttcttctacc cagctccaat
5901 gagtgccatg aagtgaatat agtactactt aaccgtactt acataggttt
5951 gtttttcttt ttcctt