Sequence of DPV Rice stripe virus
Rice stripe virus genomic RNA, complete sequence of segment 2.
ACC No: D13176
Dated: 2003-05-21 | Length: 3514 | CRC: 2022507479
!!NA_SEQUENCE 1.0
ID RCSRNA standard; RNA; VRL; 3514 BP.
XX
AC D13176;
XX
SV D13176.1
XX
DT 29-SEP-1994 (Rel. 41, Created)
DT 21-MAY-2003 (Rel. 75, Last updated, Version 7)
XX
DE Rice stripe virus genomic RNA, complete sequence of segment 2.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-3514
RA Ishihama A.;
RT ;
RL Submitted (08-SEP-1992) to the EMBL/GenBank/DDBJ databases.
RL Akira Ishihama, National Institute of Genetics, Dept. of Developmental
RL Genetics; 1111 Yata, Mishima, Shizuoka 411, Japan (Tel:81-559-75-0771,
RL Fax:81-559-71-3651)
XX
RN [2]
RP 1-3514
RX MEDLINE; 93224901.
RX PUBMED; 8468559.
RA Takahashi M., Toriyama S., Hamamatsu C., Ishihama A.;
RT "Nucleotide sequence and possible ambisense coding strategy of rice stripe
RT virus RNA segment 2";
RL J. Gen. Virol. 74:769-773(1993).
XX
DR SPTREMBL; Q85429; Q85429.
DR SPTREMBL; Q89717; Q89717.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /organism="Rice stripe virus"
FT /isolate="Isolate T"
FT /segment="2"
FT CDS 81. .680
FT /db_xref="SPTREMBL:Q89717"
FT /product="22.7K protein"
FT /protein_id="BAA02469.1"
FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI
FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV
FT TNGIPISKNFNEIALPDPSPSDDYVLVGAHECPILM"
FT CDS complement(980. .3484)
FT /db_xref="SPTREMBL:Q85429"
FT /note="The amino acid sequence shows weak similarity to
FT parts of the membrane glycoproteins of viruses of the
FT Bunyaviridae."
FT /protein_id="BAA02470.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC
FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY
FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ
FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL
FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED
FT SIAPNTNVSDKVKRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYIERDGVDMLE
FT HVKSEPLKDVLVSSSGISLSTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF
FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
XX
SQ Sequence 3514 BP; 1077 A; 731 C; 631 G; 1075 T; 0 other;
D13176 Length: 3514 May 28, 2003 14:38 Type: N Check: 7968 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagaatctc gtcttcagca atggcattac tccttttcaa
101 tgatcactac tatggttttc tccataaata taaaagacat actggatcat
151 atgataatct cttcaatttg aggtgctcta aagaagacca ctatttgaac
201 tctcttgatg ccatctggct catgggatgc tgtgaggagt tcacagatcc
251 agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt
301 tggttaacaa caatgccgtg atatctgatg agaggctgaa gtgctggctc
351 tgtaaaaaac catctcatca acagactgag catctgaagc tgatcttgtt
401 gcccaatttg gtcaacgggt ttcagtttgc tacagagtca tatcatatat
451 gcctgaagga tcactctgga gatgacccta cacaatatct tagtgaattc
501 tcctttccca caggattaag agcctactac aaaccacatc agaagatgga
551 gcataaacat atagttgtga ccaatggaat acccatctca aagaatttta
601 acgaaattgc tctccctgac ccatctccta gtgatgacta tgtcttggtc
651 ggagcacatg agtgtcctat tctaatgtga atttggaaga tgatattgac
701 tgtggcctac aggcacatac acacactggc ctcaaacact aaaatggtgc
751 tatgcatcaa tttataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggc gagcctagct cactttgatt attgagtaaa ttaatgaaaa
851 caaacaagta taatagtaac tataatagct ttcttattat tatgtgatta
901 atacgctaaa aactacacac ttaagcttaa gagaagatta ctaatgaaaa
951 tatgagtatg catgagtgaa cctattggct taatcaacct gtctgatgtc
1001 atctagaaaa ctcctaatgg tcttcaaaat gagtcctatt ggtattattg
1051 aagctactag agataacttt gggttgtcct tgactatacc ggctagcaat
1101 tccatccaat tggtggtgct ggtcttcaca gcttcaaaag agctcacatc
1151 aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc
1201 acataagagt atcaccagag tatatgaatt tgcatttgat catggaacca
1251 actgtgaccg aatagtaagt tgttgttatg catgttcctt ttttaatgtt
1301 gttcagtatc atagggcaaa ctgccaatcc ctcacaagcc aagatatcac
1351 tgagatagac tttgtttgaa gattcaatgc tcacagttgt cttcttaaat
1401 ttcctctcta taccagtaat cttgcatgag gtcccattga gggatatctt
1451 actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta
1501 ctggaaacag atccaaggtg cttagagata taccagagct agagaccaac
1551 acatccttta aaggttcact tttcacatgc tctagcatgt ccactccatc
1601 cctctctata tacctaataa ctggcaaatc ttcatttgaa agtatcttag
1651 ttttacactt actgctaaga acaacagcat cttctttagt tggacactgt
1701 atgttgccta gtaactcttt gtcaaaagac cctaaatcat ttgcggtcct
1751 taaataagct ttcccatcac actctgcata ttctctaggc attctggcac
1801 tattatagtt tgacaatgat atagaaacta aagggctatc atacttgcta
1851 gtaatgcctc ctagttcctt caacacatgt ccattttttt gaatataccc
1901 aactatttca aacttagtat ccatgcactt cataatggtg catgctctag
1951 aagatgttgg ttcatattct attcttttcc aattgtagtg gtatgctggg
2001 caataggaaa agatgtggaa atcagtgaca caataatcaa agctcagact
2051 agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaagca cttccattcc tctctagaga tcaccctttt gaaactgttg
2151 gtataataca gaggcactga taagcacata actcgaacac tattaaaacg
2201 tatcttgtag acatcagtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 ttagtagggt caatttcatt ttggagatga agtcacaact attatttgtg
2301 cacctctcta tattggaaat gcttgaaaca aggtcttggc aggattctgc
2351 agaacaaact aatagtaaga tcatcaatac atatggtatg aatatcagtc
2401 cattctctac ttttctaccc ttccttttta ctttatcaga aacattagtg
2451 ttaggtgcaa tggagtcttc tacaactaat aggccctcct ctgcttcatc
2501 cactactcta actgttgaca tatctacaga tacttcatct acaacaggtc
2551 tcctatgaca tagtccaacc attgaatata gtaccttctt tagaagccaa
2601 aatgcaggtt ttagaaaaaa taagatattc attatggtga tgagagtgaa
2651 tactatcact ataacaaaaa acaagattat agagtacaat gaatatctat
2701 agatgtggga gcattgataa ttctttattc tcattatcat gtccattctc
2751 tcatacttgt cacaaatctc tcctgggtga caagttacat tttgacaacc
2801 acccttatca caaacttcaa tagtatcatc ataagttgga agtttgactg
2851 attcacaaga agggatggaa aatgtttggt cactcacatt gacctcacat
2901 gcagaattga tataatacag cacaccatct gtgcaagagg gcttgattgc
2951 aacaccatga tttatgattt cttcaggttt cttagcttgg tcaggttgaa
3001 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg
3051 agatttgagt atgaaatctt ttcagaattg gaattggtta tcaatagagg
3101 gcttgaggtg tattctgttt gctgtatgcc taccagagac acattctgca
3151 gaatagcatc atcgcaactg agatagacgt gaccaccgaa cttagagaaa
3201 gaaggatgga gaggcagctt gtaatcgtag tttccagtgt agcatgtctc
3251 aaagtaattc acactagccc tattgtaaca aatcagacca ttttcaatga
3301 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg
3351 caagggacct tgacaatctc agatggttcc ctctccctgt tcctcatcca
3401 agaatgggtg tcagggaaag ggattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcaa agaagttata
3501 cccagacttt gtgt