Sequence of DPV Narcissus mosaic virus
Narcissus mosaic virus genomic RNA, complete genome.
ACC No: D13747
Dated: 2007-11-01 | Length: 6955 | CRC: 1288348968
ID D13747; SV 1; linear; genomic RNA; STD; VRL; 6955 BP.
XX
AC D13747; D00405;
XX
DT 27-NOV-1992 (Rel. 34, Created)
DT 01-NOV-2007 (Rel. 93, Last updated, Version 6)
XX
DE Narcissus mosaic virus genomic RNA, complete genome.
XX
KW .
XX
OS Narcissus mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6955
RA Linthorst H.J.;
RT ;
RL Submitted (13-APR-1989) to the EMBL/GenBank/DDBJ databases.
RL Huub J. Linthorst, State University of Leiden, Department of Biochemistry;
RL Wassenaarseweg 64, Leiden 2333 AL, Netherlands (Tel:31-71-272727,
RL Fax:31-71-274537)
XX
RN [2]
RX PUBMED; 2732689.
RA Zuidema D., Linthorst H.J., Huisman M.J., Asjes C.J., Bol J.F.;
RT "Nucleotide sequence of narcissus mosaic virus RNA";
RL J. Gen. Virol. 70:267-276(1989).
XX
CC The nucleotide sequence of the five 5'-terminal residues was not
CC unambiguously determined. By analogy to potato virus X, white
CC clover mosaic virus and papaya mosaic virus, this 5'-terminal
CC sequence is probably GAAAA.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6955
FT /organism="Narcissus mosaic virus"
FT /mol_type="genomic RNA"
FT /note="NMV genome excluding the 3' poly-A tail"
FT /db_xref="taxon:12180"
FT CDS 81. .5012
FT /codon_start=1
FT /product="186K protein"
FT /db_xref="GOA:P15095"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/Swiss-Prot:P15095"
FT /protein_id="BAA02891.1"
FT /translation="MAKVRAALERIRDPSVQTALSEAAYTHVRPVLKESLVNCPYALSN
FT DEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPKHSCTMLFLKRSKLRYM
FT RRAAILKDVFLNKDVEPKDLFRYDRDTIRSRLQDIDTKIAYMSDTLHFMSRREIVQLFE
FT DSPKLETLLATVVLPVEALHKRTSLYPSLYSINYSAKGFEYIPGNHGGGSYFHPYTTLE
FT WLKVRMINAEDFHKLSTGFILTFQLVESLGANHLFIVQKAKLLTPQMRTFCRDSLVTLP
FT QVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEIV
FT HLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTAVRKFVELFKGKQDFDKLLIALK
FT WQPFSYSLEPVDFTAYFVSRRVRTLAKMEDISWHQAAELARRLESEPDLLSWEDLCSKP
FT IADPLASVSTPPLATLTSPAISESRVTDTSSPKLTNISVESILHPTSSNHATIAESLNP
FT KFCGWTRGDFHHMIVNQPSDRLKGCRSWSYTTSPDVDLMLENLLLTPIPWESRLSDILL
FT TLNTPANACCIQILDCSAASAWVDWSVQPIKTFPVAFVGMGETTLTFEDDSTLPLKEGE
FT FVFFPPEWLARHKYQIKTASNLHLCATFLVLDTTLLGETLANNCIEPEPLRPTASRKSC
FT QPTPSVDKSGADSPPEKQIVTPIVDAAVLSCRPKLQDVTKPTKVLMAAETSDSVADSLP
FT WASWVNLLQKHGFKGNQQQIAQDGQLIIPISDIRKLPHIPFPEEVPETLRETLKNIKRF
FT PVEITMQHKRAGSYDSDIKNNRTGKLLSQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGG
FT SGKSFAIQEWMRSLKEDQSVVTVVTPTVLLRNDWQTKLPILPADVFKTFEKSVIQPCNP
FT ILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVYHETNPEAYIAALPEAVEIFS
FT PYCEFYLNATHRNVKDLANKLGVYSEREGKLKVNFASHHLKASRIPMLVPSTMKRNAMF
FT DMGHHSMTYAGCQGLTAPKIQILLDNHTQFCSERVLYTCLSRAVDRIHFINTGPTTGDY
FT WAKLESTPYLKAFIDTYRDEKTEVYNSQPASAEPTEPEAPATHFPTAPKPLLEPLVEKL
FT TDKEAREIFSPAFGHSNAIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLRE
FT FNMKRDIGDILFMNYAKLMCLPPEPVPFEERLWKISADEVRNTYISKPIGNLVNAASRQ
FT SPDFPKNKIALFLKSQWVKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRR
FT FQPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFN
FT IPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQV
FT YAGDDMALDRVSIEKDSFNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVMTPAGIIKHSL
FT KMHASIQLQKKINNIKESARSYALDLRYAYKLGDELQEHLNEVEADYHQQSVRDMHLLH
FT QQDVLNKGSASPPHVFEKTADANTAGSSKTHKRNALKKKKQTRIAEILPSPDATGLSSL
FT PFRFF"
FT promoter 4977. .4994
FT /note="subgenomic promoter consensus sequence"
FT CDS 5014. .5715
FT /codon_start=1
FT /product="26K protein"
FT /db_xref="GOA:P15096"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/Swiss-Prot:P15096"
FT /protein_id="BAA02892.1"
FT /translation="MDCKYLLELLDSYSFIRSSRSFSSPIIIHGVAGCGKSTIIQKIAL
FT AFPELLIGSFTPALLDSNSGRKQLAVTSDPLDILDEYLGGPNPVVRLAKFCDPLQYSCE
FT QPEVPHFTSLLTWRFCVRTTALLNGIFGCQIKSRREDLCHLTHENPYTTDPKGVVVAHE
FT QEVINLLLQHGCPVTPTQHLWGLTIPVVSVYITSIASLSTVDRANLFLSLTRDSKALHI
FT FEFDAWSHATC"
FT CDS 5690. .6082
FT /codon_start=1
FT /product="14K protein"
FT /db_xref="GOA:P15097"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/Swiss-Prot:P15097"
FT /protein_id="BAA02893.1"
FT /translation="MPGLTPPVNYEQVYKVLAIGFLLCASIYCLRSNHLPHVGDNIHSL
FT PHGGNYADGTKRVQYFRPHSSTSTNHKYTALCAVLTLSLLIFAQTRLAAGNRITSVSIC
FT HHCSSQGSLSGGNHGRVSGHSELPTT"
FT CDS 5841. .6143
FT /codon_start=1
FT /product="11K protein"
FT /db_xref="GOA:P15098"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/Swiss-Prot:P15098"
FT /protein_id="BAA02894.1"
FT /translation="MQTAPREYSTSGPTAVLAPTTNTQHYAPYSLYRFLSSHKLDLLLG
FT IALLVFLYVITAAPKEVCQVVITGESVVIRNCQQPDRILANLNLSPWNGVKFPLL"
FT promoter 6118. .6135
FT /note="subgenomic promoter consensus sequence"
FT CDS 6193. .6915
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /db_xref="GOA:P15100"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/Swiss-Prot:P15100"
FT /protein_id="BAA02895.1"
FT /translation="MATPSTQTTDPKPANADLSDPNRAPSLEDLKKIKYESTTTAVATP
FT AEIQLLGDLFKKLGLDANSVAPAMWDLARAYADVQASRSAVLSGTTPSNPAITRQALAR
FT QFYVINITPRQFCMYFAKVVWNLLLDSNVPPAGWAKQGLPDDCKFAGFDFFEGVLSPAA
FT LDPADGLIRPPSQREIQAHSTAKYGALARQRYRMETSFPPWLKSLTVGSAVSTPCTPLK
FT HLQNCNRNTSKLKLVCGL"
FT CDS 6296. .6580
FT /codon_start=1
FT /product="10K protein"
FT /db_xref="UniProtKB/Swiss-Prot:P15099"
FT /protein_id="BAA02896.1"
FT /translation="MNQPQLPSPPQLRFSCSVIFSRNLVLTLTQSHPLCGTSLEPTPMC
FT KRVVQQCYLEPHHQTLRSPGKLSLDSFTSLTSLHASSACTSPRWSGTCY"
XX
SQ Sequence 6955 BP; 1939 A; 1860 C; 1436 G; 1720 T; 0 other;
d13747 Length: 6955 01-NOV-2007 Type: N Check: 1160 ..
1 gaaaacaaac caacacaaac acacgtatcc tcaaacggac catataaggt
51 gaataatagc aatacgcact atacacccat atggctaaag tacgtgccgc
101 gttggagaga attagggacc catcggtgca aaccgcttta tctgaagcag
151 cttacacaca tgtccgcccc gttctcaaag aatccctagt caactgcccc
201 tatgcccttt ctaacgacga agctgattgc ttagaaagtt ttggcattac
251 tgtaaatcca tatgctaacc aaactcacac tcacgcagca tgtaaagtta
301 tagagaatag aatgttagaa atagttggca tgcacttacc taaacactca
351 tgcaccatgc ttttcctgaa aagaagcaaa ttgcgataca tgcggagggc
401 agctatactt aaagacgtct ttctcaataa agacgttgaa cctaaagacc
451 tgtttcgcta cgatcgtgat acaataagaa gtagactgca ggatatagac
501 accaaaattg catatatgtc tgacactctg catttcatgt ctcgcaggga
551 aatagtgcag ttatttgagg attcaccgaa acttgagaca ctactcgcca
601 ctgttgtgct accagtcgaa gcccttcaca agagaacatc gctctacccg
651 agcttgtact cgatcaacta ctcagctaag ggcttcgaat acataccagg
701 caaccatggc gggggttctt atttccatcc ctacacaacc ctcgaatggc
751 tcaaggtgcg tatgatcaac gctgaagact tccataaact ctcaaccggg
801 tttattttaa ccttccaact tgtggaaagc ttaggtgcta atcacctttt
851 catagtgcag aaagccaaac tcctaacgcc acagatgcgc actttctgtc
901 gtgacagctt ggtcacactc ccacaagttt tttgtccggc agctatgaac
951 gctaatagac ctctctccaa aactaaagct atgcaaatgc tattatattg
1001 caaatcggtc aagcaagtta ccgagagaga tatctacgca aaaattaggc
1051 aaatcattcc cacaagcgag ctcgagctgt acgatcccga tgaaattgtg
1101 catttggcta attatttttt ctttgtttct agcttagatt caataacttg
1151 ctacgaagat cttctctcat cagacatctg gatgagactc actaggccac
1201 tcaggacagc ggttcggaag ttcgtcgaac tctttaaagg caaacaagac
1251 tttgataagt tattgatcgc tcttaaatgg caacccttct cctactcatt
1301 agagccagtt gacttcacgg catacttcgt aagccgtcga gtacgcacac
1351 tggctaagat ggaggacata tcatggcatc aagctgctga actggcccgt
1401 cgtctcgaaa gtgaacccga cctcctctct tgggaagatc tttgttccaa
1451 gcccattgct gatcccctcg ctagcgtctc caccccacct ctcgctacgc
1501 tcacctcgcc tgccatctcg gaaagcaggg ttactgacac ctcttccccc
1551 aaactaacta acatttcagt cgaatccatc ctccacccaa ccagctctaa
1601 ccacgccacc atagctgaat ccctaaatcc aaaattctgt ggatggacta
1651 gaggggactt tcatcacatg atcgttaacc aacccagtga cagactcaaa
1701 ggttgccgat catggtctta caccacttca cctgacgtgg acttgatgtt
1751 ggaaaatctt cttctaactc ccatcccctg ggaatcaaga ttgtccgaca
1801 ttttactcac acttaacacc cctgctaacg cttgctgcat ccaaatttta
1851 gactgctcag cagcgagtgc ctgggtcgat tggtcagtcc aaccaatcaa
1901 gactttccct gttgcttttg tggggatggg tgaaaccaca ttaactttcg
1951 aagacgactc gaccctacca ctgaaagagg gcgagttcgt gtttttccca
2001 cccgagtggt tggcccggca taaatatcag atcaaaactg cgtcgaatct
2051 ccacctgtgc gcaacttttc ttgtgttaga cacaactcta cttggtgaaa
2101 cccttgccaa caattgtatt gaaccagaac cactcaggcc taccgcctcc
2151 cgcaaatcat gtcaacccac tccatcggta gacaagagcg gagctgactc
2201 accacctgag aaacaaatcg tcacacccat cgttgacgcg gccgtgttaa
2251 gttgtcgacc caagctgcaa gatgtgacca aacccaccaa agttctaatg
2301 gccgctgaaa cctctgattc agtggctgac tcgctaccgt gggcaagctg
2351 ggtgaacttg ctacagaaac acggtttcaa agggaatcaa caacagattg
2401 cacaggatgg acaacttatc attcctatca gtgacatccg caagctacca
2451 catatcccct tcccagagga agtaccggaa acactgcgag agactctcaa
2501 aaacatcaaa cgtttcccag tcgaaataac aatgcaacat aaaagggctg
2551 gctcctacga ctctgatatc aagaacaatc ggactggcaa gttgctgtct
2601 cagatggaca acaaatggaa ggccgctttt gcgtataagc tgcaacagga
2651 ggacaggaaa gtttgcggta caatcattca cggctgcgga ggctccggca
2701 aatcctttgc cattcaagag tggatgcgat ctttgaagga agaccagtca
2751 gtggtcacag tcgtcacacc aacggttttg ctgagaaacg actggcaaac
2801 gaagttaccc atcctgccgg cagatgtttt caaaactttc gagaaatcgg
2851 tgatccaacc ctgcaatcca attttagtgt ttgatgacta cacaaaattg
2901 ccacctggat tgatagagag tgtagtcatg catcaccaga acgttgtttt
2951 catcattctc actggagaca accgacagtc cgtttaccac gagaccaacc
3001 cggaagcgta catcgcagcg ttacctgaag cggtagagat tttcagcccc
3051 tactgtgagt tctacctcaa tgccacccac cgaaacgtta aagacctagc
3101 caacaagctg ggtgtttact ctgaaaggga gggcaagttg aaagtaaact
3151 tcgcttcaca tcacctcaaa gcttctcgaa tcccaatgtt ggtgccttca
3201 actatgaaac gcaatgcgat gttcgatatg ggccaccaca gcatgacgta
3251 tgccggctgc caaggtctta ccgccccaaa aatccaaatc ttgctcgaca
3301 accacactca attttgttca gagcgggttc tctatacttg cttgtctcgt
3351 gccgtcgaca gaattcattt catcaacaca ggacccacga caggagacta
3401 ttgggcgaaa ttggaaagca ctccctatct caaggctttc atagacactt
3451 acagggacga gaaaacagaa gtctacaatt cccagcccgc gagtgccgaa
3501 ccaaccgagc ctgaagcacc cgccacgcat tttcccacgg caccgaaacc
3551 ccttcttgag ccgctagtgg agaaattgac cgataaagag gcgagagaaa
3601 tcttttcacc tgctttcggc cactcaaacg ccattcaaac agaagattct
3651 gttgttcagc tgttccaaca ccagcaagcg aaagacgaaa ctctttattg
3701 ggccaccatc gacacaagat tggctatctc cacgcctgaa gcaaatttaa
3751 gggagttcaa catgaaacgt gacattggcg acattctgtt catgaattac
3801 gccaaactga tgtgcttgcc cccagagcca gttcccttcg aagagaggct
3851 atggaaaatc tcagctgatg aggtccgcaa tacttatatt agcaaaccca
3901 tcggcaatct ggtgaatgct gcttctcgtc aaagcccaga ctttccgaag
3951 aacaagatcg ctctgtttct gaagtcacaa tgggtgaaga agacagaaaa
4001 actgggaacc ttgaaagtca agccaggaca gaccatcgct tctttcatgc
4051 aagaaactgt catgctctat ggcaccatgg cgcgctactt acgtaagatg
4101 cggagaagat tccagcctga caacattttc atcaactgcg aaactacccc
4151 agaagacctg gataagttta ttaagagtca gtgggatttc tccagaccag
4201 cgcacaccaa tgacttcact gctttcgatc agtcacaaga tggcgccatg
4251 ctgcagtttg aagtgattaa ggcaaaattt ttcaacatac ctgctgagat
4301 catcgagggc tacatctaca tcaaactcaa cgcagccatt ttcttgggca
4351 ccttgggcat catgcggctc agtggagaag gaccaacatt tgacgccaat
4401 actgaatgtt caatcgccta caacgccacc aggtttcata tcactgatga
4451 cacagctcaa gtctacgcag gcgatgacat ggcgttggac cgggtgagca
4501 ttgaaaaaga cagcttcaat agattagaga aacagctgaa gctcacatcg
4551 aaaccgatgt ttcctaaaca agtcaaaggg gattacgcag aattttgtgg
4601 ttgggtcatg actcccgctg gcatcatcaa acattctttg aaaatgcatg
4651 cttccatcca actacagaag aagatcaaca acatcaaaga gagtgctaga
4701 tcctacgcac ttgatctgcg ttacgcgtac aaactgggag acgagctgca
4751 agaacattta aatgaggtag aagcggacta ccaccagcaa tctgttcgcg
4801 acatgcactt gcttcatcag caagatgtgt tgaacaaagg tagtgccagt
4851 ccgccacatg ttttcgagaa aacggccgac gccaacactg cgggaagctc
4901 gaagactcac aagcgaaacg cgctgaagaa gaagaagcag actcgaattg
4951 cagaaattct tccgagtcct gacgctaccg ggttaagttc attgcctttt
5001 cgtttttttt gaaatggact gtaagtattt attagagtta ttagattcgt
5051 atagtttcat acgttcttct aggtcgtttt cgtcacccat cattatccac
5101 ggtgttgctg gctgcggtaa atctacaatc atccagaaga ttgctcttgc
5151 tttccctgaa cttttaatcg gcagcttcac accagctttg cttgactcca
5201 attccggccg gaaacaattg gcagttacct ccgacccgct agacatcttg
5251 gacgaatact tgggcggccc taacccagtc gttaggcttg caaaattttg
5301 cgatcctttg caatattctt gtgagcagcc tgaggttcca catttcactt
5351 ccttactcac ttggaggttt tgtgttcgta ccactgctct tttaaacgga
5401 attttcggct gccaaatcaa gtctcgtcgt gaggatctgt gtcatctcac
5451 ccacgagaat ccttacacca ccgatcctaa aggagtagtc gtggcccacg
5501 aacaagaagt catcaacttg ctgctgcaac acggttgccc cgtgactccc
5551 actcaacacc tttggggcct gaccattcca gttgtgagcg tctacatcac
5601 ctccatcgcc tccttgtcca ctgttgaccg tgccaatctc tttctgagtc
5651 tcactagaga ctcaaaagcg ctccacattt tcgaattcga tgcctggtct
5701 cacgccacct gttaactacg agcaggtgta taaagttttg gctatcggat
5751 tcctgctctg cgcttctatc tattgtctga ggtctaatca cttgccacac
5801 gtgggagata acattcattc ccttccccac ggaggcaatt atgcagacgg
5851 caccaagaga gtacagtact tccggcccca cagcagtact agcaccaacc
5901 acaaatacac agcattatgc gccgtactca ctttatcgct tcttatcttc
5951 gcacaaactc gacttgctgc tgggaatcgc attactagtg tttctatatg
6001 tcatcactgc agctcccaag gaagtttgtc aggtggtaat cacgggagag
6051 tcagtggtca ttcggaactg ccaacaacct gatcgcattt tggccaatct
6101 caatctatca ccgtggaacg gggttaagtt tcctttatta tagtttaaaa
6151 tttttagact ttgtgtgtat tatatagaat aaatactctt caatggctac
6201 tcccagcact cagacaaccg atcctaagcc cgccaacgct gatctctccg
6251 acccgaatag agctccatca ctggaggact tgaagaagat caagtatgaa
6301 tcaaccacaa ctgccgtcgc caccccagct gagattcagc tgctcggtga
6351 tcttttcaag aaacttggtc ttgacgctaa ctcagtcgca cccgctatgt
6401 gggacctcgc tcgagcctac gccgatgtgc aagcgagtcg ttcagcagtg
6451 ctatctggaa ccacaccatc aaaccctgcg atcacccggc aagctctcgc
6501 tcgacagttt tacgtcatta acatcactcc acgccagttc tgcatgtact
6551 tcgccaaggt ggtctggaac ttgctactag actcaaacgt cccacctgct
6601 ggatgggcaa aacagggact tcctgacgat tgcaagttcg ccggcttcga
6651 cttctttgaa ggcgtgcttt cacctgccgc acttgaccca gcagacggcc
6701 tcatcagacc tccctctcag cgtgagattc aagcgcactc cacggcgaaa
6751 tatggcgctc ttgccaggca acgctacaga atggaaactt cgtttccacc
6801 ttggctgaag tcactcacgg tagggtcggc ggtgtcaacg ccatgtacgc
6851 cattgaagca cctccagaat tgtaatagaa acactagcaa acttaaatta
6901 gtgtgtggtt tataaagttt tacttccact atcaataaaa taaactattg
6951 atatt