Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA3, complete sequence.
ACC No: D28486
Dated: 2003-07-07 | Length: 2218 | CRC: -1249125209
!!NA_SEQUENCE 1.0
ID CMCMVA standard; RNA; VRL; 2218 BP.
XX
AC D28486;
XX
SV D28486.1
XX
DT 31-MAY-1996 (Rel. 47, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE Cucumber mosaic virus RNA3, complete sequence.
XX
KW 3a; coat protein; CP; movement protein.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-2218
RA Chaumpluk P.;
RT ;
RL Submitted (04-FEB-1994) to the EMBL/GenBank/DDBJ databases.
RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN [2]
RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA Mise K., Inouye N., Okuno T., Furusawa I.;
RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT by nucleotide sequence analysis on RNA3's cDNAs";
RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR GOA; Q66137.
DR GOA; Q66138.
DR SWISS-PROT; Q66137; MOVP_CMVN.
DR SWISS-PROT; Q66138; COAT_CMVN.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2218
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /note="isolated from statice Limonium sinuatum (necrotic
FT spot)"
FT /organism="Cucumber mosaic virus"
FT /clone="N3/17-23"
FT /strain="N"
FT /segment="3"
FT 5'UTR 1. .122
FT CDS 123. .962
FT /codon_start=1
FT /db_xref="GOA:Q66137"
FT /db_xref="SWISS-PROT:Q66137"
FT /product="movement protein"
FT /protein_id="BAA05844.1"
FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYVLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT misc_feature 963. .1260
FT /note="put. inter-cistronic region"
FT misc_feature 1120. .1132
FT /note="put. tRNA ICR2-like region"
FT CDS 1261. .1917
FT /codon_start=1
FT /db_xref="GOA:Q66138"
FT /db_xref="SWISS-PROT:Q66138"
FT /product="coat protein"
FT /protein_id="BAA05845.1"
FT /translation="MDKSESTSAGRNRRRRPRRGSRSASSSSDANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVHQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT misc_feature 2088. .2218
FT /note="tRNA-like structure"
XX
SQ Sequence 2218 BP; 517 A; 527 C; 529 G; 645 T; 0 other;
D28486 Length: 2218 July 15, 2003 09:22 Type: N Check: 6905 ..
1 gtaatcttac cactgtgtgt gtgtgcgtgt gtgtgtgtcg agtcgtgttg
51 tccgcacatt tgagtcgtgc tgtccgcaca taatatttat ttcgttgtac
101 agtgtgttag atttcccgag gcatggcttt ccaaggtacc agtaggactt
151 taactcaaca gtcctcagcg gctacgtctg acgatcttca aaagatatta
201 tttagccctg aagccattaa gaaaatggct actgagtgtg acctaggccg
251 gcatcattgg atgcgcgctg ataatgctat ttcagtccgg cccctcgttc
301 ccgaagtaac ccacggtcgt attgcttcct tctttaaatc tggatatgat
351 gttggtgaat tgtgctcaaa aggatacatg agcgtccctc aagtgttatg
401 tgctgttact cggacagtct ctactgatgc tgaagggtcc ttgagaattt
451 acttagctga tctaggtgac aaggagttat ctcctataga tgggcaatgc
501 gtctcgttac acaaccatga tcttcccgct ttggtgtctt tccaaccgac
551 gtacgactgt cctatggaaa cagttgggaa tcgtaagcgg tgttttgctg
601 tcgttatcga aagacatggt tacattgggt ataccggtac cacagctagc
651 gtgtgtagta attggcaagc aaggttttct tctaagaata acaactacac
701 tcatatcgca gctgggaaga ctctagtact gcctttcaac agattagctg
751 agcaaacaaa accgtcagct gtcgctcgcc tgttgaagtc gcaattgaac
801 aacattgaat cttcgcaata tgtgttaacg aacgcgaaga ttaatcaaaa
851 tgcgcgcagt gagtccgagg aattaaatgt tgagagccct cccgccgcaa
901 tcgggagttc ttccgcgtcc cgctccgaag ccttcagacc gcaggtggtt
951 aacggtcttt agcactttgg tgcgtattag tatataagta tttgtgagtc
1001 tgcacataat actatatcta tagtgtcctg tgtgagttga aacagtagac
1051 atctgtgacg cgatgccgtg ttgagaaggg aacacatctg gttttagtaa
1101 gcctacatca tagttttgag gttcaattcc tcttactccc tgttgagccc
1151 ccttactttc tcatggatgc ttctccgcga gattgcgtta ttgtctactg
1201 actatataga gagtgtgtgt gctgtgtttt ctcttttgtg tcgtagaatt
1251 gagtcgagtc atggacaaat ctgaatcaac cagtgctggt cgtaaccgtc
1301 gacgtcgtcc gcgtcgtggt tcccgctccg cttcctcctc ctcggatgct
1351 aactttagag tcttgtcgca gcagctttcg cgacttaaca agacgttagc
1401 agctggtcgt ccaactatta accacccaac ctttgtaggg agtgaacgtt
1451 gtaaacctgg atacacgttc acatctatta ccctaaagcc accaaaaata
1501 gaccgtgggt cttattatgg taaaaggttg ttattacctg attcagtcac
1551 ggaatatgat aagaagcttg tttcgcgcat tcaaattcga gttaatcctt
1601 tgccgaaatt cgattctacc gtgtgggtga cagtccgtaa agttcctgcc
1651 tcctcggact tatccgttgc cgccatctct gctatgtttg cggacggagc
1701 ctcaccggta ctggttcatc agtatgctgc atccggagtc caagctaaca
1751 acaaattgtt gtatgatctt tcggcgatgc gcgctgatat aggcgacatg
1801 agaaagtacg ccgtcctcgt gtattcaaaa gacgatgcgc tcgagacgga
1851 cgagctggta cttcatgttg acgtcgagca ccaacgcatt cccacgtctg
1901 gggtgctccc agtctgattc cgtgttttcc agaaccctcc ctccgatttc
1951 tgtggcggga gctgagttgg cagttctgct ataaactgtc tgaagtcact
2001 aaacgtttta cggtgaacgg gttgtccatc cagcttacgg ctaaaatggt
2051 cagtcgtgga gaaatccacg ccagtagatt tacaaatctc tgaggcgcct
2101 ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc
2151 tagcacaccg tgctagtttc agggtacagg tgccccccca ccctcgtggg
2201 ggctctccaa agagacca