Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA3, complete sequence.
ACC No: D28487
Dated: 2003-07-07 | Length: 2215 | CRC: 1402235034
!!NA_SEQUENCE 1.0
ID CMCMVB standard; RNA; VRL; 2215 BP.
XX
AC D28487;
XX
SV D28487.1
XX
DT 31-MAY-1996 (Rel. 47, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE Cucumber mosaic virus RNA3, complete sequence.
XX
KW 3a; coat protein; CP; movement protein.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-2215
RA Chaumpluk P.;
RT ;
RL Submitted (04-FEB-1994) to the EMBL/GenBank/DDBJ databases.
RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN [2]
RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA Mise K., Inouye N., Okuno T., Furusawa I.;
RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT by nucleotide sequence analysis on RNA3's cDNAs";
RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR GOA; Q66139.
DR GOA; Q66140.
DR SWISS-PROT; Q66139; MOVP_CMVFT.
DR SWISS-PROT; Q66140; COAT_CMVFT.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2215
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /note="isolated from field tomato Licopersicon esculentum
FT in Kyoto"
FT /organism="Cucumber mosaic virus"
FT /clone="FT3/12-05"
FT /strain="FT"
FT /segment="3"
FT 5'UTR 1. .117
FT CDS 118. .957
FT /codon_start=1
FT /db_xref="GOA:Q66139"
FT /db_xref="SWISS-PROT:Q66139"
FT /product="movement protein"
FT /protein_id="BAA05846.1"
FT /translation="MAFQGTSRTLTQQSSADTSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYLLTNVKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT misc_feature 958. .1256
FT /note="put. inter-cistronic region"
FT misc_feature 1115. .1127
FT /note="put. tRNA ICR2-like region"
FT CDS 1257. .1913
FT /codon_start=1
FT /db_xref="GOA:Q66140"
FT /db_xref="SWISS-PROT:Q66140"
FT /product="coat protein"
FT /protein_id="BAA05847.1"
FT /translation="MDKSESTSAGRNRRRRLRRGSRSAPSSADANFRVLSQQLSRLNKT
FT LSAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDTLETDELVLHVDVEHQRIPTSGVLPV"
FT misc_feature 2085. .2215
FT /note="tRNA-like structure"
XX
SQ Sequence 2215 BP; 514 A; 521 C; 532 G; 648 T; 0 other;
D28487 Length: 2215 July 15, 2003 09:22 Type: N Check: 8328 ..
1 gtaatctaca ctgtgtgtgt gcgtgtgtgt gtgtcgagtc gtgttgtccg
51 cacatttgag tcgtgttgtc cgcacatttt attttatctt tatacagtgt
101 gttagatttc ccgaggcatg gctttccaag gtaccagtag gactttaact
151 caacagtcct cagcggacac gtctgacgat cttcaaaaga tattatttag
201 ccctgaagcc attaagaaaa tggctactga gtgtgaccta ggccggcatc
251 attggatgcg cgctgataat gctatttcag tccggcccct cgttcccgaa
301 gtaacccacg gtcgtattgc ttccttcttt aaatctggat atgatgttgg
351 tgaattatgc tcaaaaggat acatgagcgt ccctcaggtg ttgtgtgctg
401 ttactcgaac ggtttccact gatgctgaag ggtccttgag aatttactta
451 gctgatctag gtgacaagga gttatctcct atagatgggc aatgcgtttc
501 gttacataac catgatcttc ccgctttggt gtccttccaa ccgacgtatg
551 actgtcctat ggaaacagtt gggaatcgca agcggtgttt tgctgtcgtt
601 atcgaaagac atggttacat tgggtatacc ggtaccacag ctagcgtgtg
651 tagtaattgg caagcaaggt tttcttctaa gaataacaac tacactcata
701 tcgcagctgg gaagactcta gtactgcctt tcaacagatt agctgagcaa
751 acaaaaccgt cagctgtcgc tcgcctgttg aagtcgcaac tgaacaacat
801 tgaatcttcg caatatctgt taacgaatgt gaagattaat cagaatgcgc
851 gcagtgagtc cgaggaatta aatgttgaga gccctcccgc cgcaatcggg
901 agttcttccg cgtcccgctc cgaagccttc agaccgcagg tggttaacgg
951 tctttagcac tttggtgcgt attagtatat aagtatttgt gtgtctgtac
1001 ataatactat atctatagtg tcctgtgtga gttgatacag tagacatctg
1051 tgacgcgatg ccgtgttgag aagggaacac atctggtttt agtaagccta
1101 catcacagtt ttgaggttca attcctctta ctccctgttg agccccttac
1151 tttctcatgg atgcttctcc gcgagattgc gttattgtct actgactata
1201 tagagagagt gtgtgtgctg tgttttctct tttgtgtcgt agaattgagt
1251 cgagtcatgg acaaatctga atcaaccagt gctggtcgta accgtcgacg
1301 tcgcttgcgt cgtggttccc gctccgcccc ctcctccgcg gatgccaact
1351 ttagagtctt gtcgcagcag ctttcgcgac ttaacaagac gttgtcagcc
1401 ggtcgtccaa ctattaacca cccaaccttt gtagggagtg agcgttgtaa
1451 acctgggtac acgttcacat ctattaccct aaagccacca aaaatagacc
1501 gtgggtctta ttatggtaaa aggttgttat tacctgattc agtcacggaa
1551 tatgataaga aacttgtttc gcgcattcaa attcgagtta atcctttgcc
1601 gaaatttgat tctaccgtgt gggtgacagt ccgtaaagtt cctgcctcct
1651 cggacttatc cgttgccgcc atctctgcta tgtttgcgga cggagcctca
1701 ccggtactgg tttatcagta tgctgcatct ggagttcaag ctaacaacaa
1751 actgttgtat gatctttcgg cgatgcgcgc tgatataggc gacatgagaa
1801 agtacgccgt cctcgtgtac tcaaaagacg atacgctcga gacggacgag
1851 ctggtacttc atgttgacgt cgagcaccaa cgcattccca cgtctggggt
1901 gctcccagtc tgattccgtg ttttccagaa ccctccctcc gatttctgtg
1951 gcgggagctg agttggcaag ttctgctata aactgtctga agtcactaaa
2001 cgttttacgg tgaacgggtt gtccatccag cttacggcta aaatggtcag
2051 tcgtggagaa atccacgcca gcagacttac aagtctctga ggcgcctttg
2101 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacttctag
2151 cacaatgtgc tagtttcagg gtacgggtgc cccccacttt cgtgggggcc
2201 tccaaaagga gacca