Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA3, complete sequence.
ACC No: D28488
Dated: 2003-07-07 | Length: 2219 | CRC: 1817048483
!!NA_SEQUENCE 1.0
ID CMCMVC standard; RNA; VRL; 2219 BP.
XX
AC D28488;
XX
SV D28488.1
XX
DT 31-MAY-1996 (Rel. 47, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE Cucumber mosaic virus RNA3, complete sequence.
XX
KW 3a; coat protein; CP; movement protein.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-2219
RA Chaumpluk P.;
RT ;
RL Submitted (04-FEB-1994) to the EMBL/GenBank/DDBJ databases.
RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN [2]
RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA Mise K., Inouye N., Okuno T., Furusawa I.;
RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT by nucleotide sequence analysis on RNA3's cDNAs";
RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR GOA; Q66141.
DR GOA; Q89785.
DR SWISS-PROT; Q66141; COAT_CMVPE.
DR SWISS-PROT; Q89785; MOVP_CMVPE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2219
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /organism="Cucumber mosaic virus"
FT /clone="P3/2-7"
FT /strain="Pepo"
FT /segment="3"
FT 5'UTR 1. .121
FT CDS 122. .961
FT /codon_start=1
FT /db_xref="GOA:Q89785"
FT /db_xref="SWISS-PROT:Q89785"
FT /product="movement protein"
FT /protein_id="BAA05848.1"
FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYLLTNVKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT misc_feature 962. .1261
FT /note="put. inter-cistronic region"
FT misc_feature 1119. .1131
FT /note="put. tRNA ICR2-like region"
FT CDS 1262. .1918
FT /codon_start=1
FT /db_xref="GOA:Q66141"
FT /db_xref="SWISS-PROT:Q66141"
FT /product="coat protein"
FT /protein_id="BAA05849.1"
FT /translation="MDKSESTGAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRESYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDTLETDELVLHVDVEHQRIPTSGVLPV"
FT misc_feature 2089. .2219
FT /note="tRNA-like structure"
XX
SQ Sequence 2219 BP; 513 A; 526 C; 531 G; 649 T; 0 other;
D28488 Length: 2219 July 15, 2003 09:22 Type: N Check: 9225 ..
1 gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc
51 cgcacatttg agtcgtgtgt cccgcacatt ttattttatt ctttcataca
101 gtgtgttaga tttcccgagg catggctttc caaggtacca gtaggacttt
151 aactcaacag tcctcagcgg ctacgtctga cgatcttcaa aagatattat
201 ttagccctga agccattaag aaaatggcta ctgagtgtga cctaggccgg
251 catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc
301 cgaagtaacc cacggtcgta ttgcttcctt ctttaaatct ggatatgatg
351 ttggtgaatt atgctcaaaa ggatacatga gcgtccctca ggtgttgtgt
401 gctgttactc gaacggtttc cactgatgct gaagggtcct tgagaattta
451 cttagctgat ctaggtgaca aggagttatc tcccatagat gggcaatgcg
501 tttcgttaca taaccatgat cttcccgctt tggtgtcctt ccaaccgacg
551 tatgactgtc ctatggaaac agttgggaat cgcaagcggt gttttgctgt
601 cgttatcgaa agacatggtt acattgggta taccggtacc acagctagcg
651 tgtgtagtaa ttggcaagca aggttttctt ctaagaataa caactacact
701 catatcgcag ctgggaagac tctagtactg cctttcaaca gattagctga
751 gcaaacaaaa ccgtcagctg tcgctcgcct gttgaagtcg caactgaaca
801 acattgaatc ttcgcaatat ctgttaacga atgtgaagat taatcagaat
851 gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccgccgcaat
901 cgggagttct tccgcgtccc gctccgaagc cttcagaccg caggtggtta
951 acggtcttta gcactttggt gcgtattagt atataagtat ttgtgtgtct
1001 gtacataata ctatatctat agtgtcctgt gtgagttgat acagtagaca
1051 tctgtgacgc gatgccgtgt tgagaaggga acacatctgg ttttagtaag
1101 cctacatcac agttttgagg ttcaattcct cttactccct gttgagcccc
1151 cttactttct catggatgct tctccgcgag attgcgttat tgtctactga
1201 ctatatagag agtgtgtgtg tgctgtgttt tctcttttgt gtcgtagaat
1251 tgagtcgagt catggacaaa tctgaatcaa ccggtgctgg tcgtaaccgt
1301 cgacgtcgtc cgcgtcgtgg ttcccgctcc gccccctcct ccgcggatgc
1351 caactttaga gtcttgtcgc agcagctttc gcgacttaac aagacgttag
1401 cagccggtcg tccaactatt aaccacccaa cctttgtagg gagtgaacgt
1451 tgtaaacctg ggtacacgtt cacatctatt accctaaagc caccaaaaat
1501 agaccgtgag tcttattatg gtaaaaggtt gttattacct gattcagtca
1551 cggaatatga taagaaactt gtttcgcgca ttcaaattcg agttaatcct
1601 ttgccgaaat ttgattctac cgtgtgggtg acagtccgta aagttcctgc
1651 ctcctcggac ttatccgttg ccgccatctc tgctatgttt gcggacggag
1701 cctcaccggt actggtttat cagtatgctg catctggagt tcaagctaac
1751 aacaaattgt tgtatgatct ttcggcgatg cgcgctgata taggcgacat
1801 gagaaagtac gccgtcctcg tgtactcaaa agacgatacg ctcgagacgg
1851 acgagctggt acttcatgtt gacgtcgagc accaacgcat tcccacgtct
1901 ggggtgctcc cagtctgatt ccgtgttttc cagaaccctc cctccgattt
1951 ctgtggcggg agctgagttg gcagttctgc tataaactgt ctgaagtcac
2001 taaacgtttt acggtgaacg ggttgtccat ccagcttacg gctaaaatgg
2051 tcagtcgtgg agaaatccac gccagcagac ttacaagtct ctgaggcgcc
2101 tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt
2151 ctagcacaat gtgctagttt cagggtacgg gtgcccccca ctttcgtggg
2201 ggcctccaaa aggagacca