Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA3, complete sequence.
ACC No: D28489
Dated: 2003-07-07 | Length: 2211 | CRC: 481840630
!!NA_SEQUENCE 1.0
ID CMCMVD standard; RNA; VRL; 2211 BP.
XX
AC D28489;
XX
SV D28489.1
XX
DT 31-MAY-1996 (Rel. 47, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE Cucumber mosaic virus RNA3, complete sequence.
XX
KW 3a; coat protein; CP; movement protein.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-2211
RA Chaumpluk P.;
RT ;
RL Submitted (04-FEB-1994) to the EMBL/GenBank/DDBJ databases.
RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN [2]
RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA Mise K., Inouye N., Okuno T., Furusawa I.;
RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT by nucleotide sequence analysis on RNA3's cDNAs";
RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR GOA; Q66142.
DR GOA; Q66143.
DR SWISS-PROT; Q66142; MOVP_CMVCS.
DR SWISS-PROT; Q66143; COAT_CMVCS.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2211
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /note="isolated from statice Limonium sinuatum (chlorotic
FT spot)"
FT /organism="Cucumber mosaic virus"
FT /clone="CS3/3-42"
FT /strain="CS"
FT /segment="3"
FT 5'UTR 1. .117
FT CDS 118. .957
FT /codon_start=1
FT /db_xref="GOA:Q66142"
FT /db_xref="SWISS-PROT:Q66142"
FT /product="movement protein"
FT /protein_id="BAA05850.1"
FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHSRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT misc_feature 958. .1254
FT /note="put. inter-cistronic region"
FT misc_feature 1115. .1127
FT /note="put. tRNA ICR2-like region"
FT CDS 1255. .1911
FT /codon_start=1
FT /db_xref="GOA:Q66143"
FT /db_xref="SWISS-PROT:Q66143"
FT /product="coat protein"
FT /protein_id="BAA05851.1"
FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLRKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT misc_feature 2081. .2211
FT /note="tRNA-like structure"
XX
SQ Sequence 2211 BP; 515 A; 526 C; 526 G; 644 T; 0 other;
D28489 Length: 2211 July 15, 2003 09:22 Type: N Check: 8900 ..
1 gtaatctaca ctgtgtgtgt gcgtgtgtgt gcgtcgagtc gtgttgtccg
51 cacatttgag tcgtgctgtc cgcacatttt gttttatctt tgtacagtgt
101 gttagatttc ccgaggcatg gctttccaag gtaccagtag gactttaact
151 caacagtcct cagcggctac gtctgacgat cttcaaaaga tattatttag
201 ccctgaagcc attaagaaaa tggctactga gtgtgaccta ggccggcatc
251 attggatgcg cgctgataat gctatttcag tccggcccct cgttcccgaa
301 gtaacccaca gtcgtattgc ttccttcttt aaatctggat atgatgttgg
351 tgaattgtgc tcaaaaggat acatgagcgt ccctcaagtg ttatgtgctg
401 ttactcggac agtctctact gatgctgaag ggtccttgag aatttactta
451 gctgatctag gtgacaagga gttatctcct atagatgggc aatgcgtttc
501 gttacacaac catgatcttc ccgctttggt gtctttccaa cctacgtacg
551 actgtcctat ggaaacagtt gggaatcgta agcggtgttt tgctgtcgtt
601 atcgaaagac atggttacat tgggtatacc ggtaccacag ctagcgtgtg
651 tagtaattgg caagcaaggt tttcttctaa gaataacaac tacactcata
701 tcgcagctgg gaagactcta gtactgcctt tcaacagatt agctgagcaa
751 acaaaaccgt cagctgtcgc tcgcctgttg aagtcgcaat tgaacaacat
801 tgaatcttcg caatatctgt taacgaacgc gaagattaat caaaatgcgc
851 gcagtgagtc cgaggaatta aatgttgaga gccctcccgc cgcaatcggg
901 agttcttccg cgtcccgctc cgaagccttc agaccgcagg tggttaacgg
951 tctttagcac tttggtgcgt attagtatat aagtatttgt gagtctgcac
1001 ataatactat atctatagtg tcctgtgtga gttgtaacag tagacatctg
1051 tgacgcgatg ccgtgttgag aagggaacac atctggtttt agtaagccta
1101 catcatagtt ttgaggttca attcctctta ctccctgttg agccccttac
1151 tttctcatgg atgcttctcc gcgagattgc gttattgtct actgactata
1201 tagagagtgt gtgtgctgtg ttttctcttt tgtgtcgtag aattgagtcg
1251 agtcatggac aaatctgaat caaccagtgc tggtcgtaac cgtcgacgtc
1301 gtccgcgtcg tggttcccgc tccgccccct cctccgcgga tgccaacttt
1351 agagtcttgt cgcagcagct ttcgcgactt aacaagacgt tagcagctgg
1401 tcgtccaact attaaccacc caacctttgt agggagtgaa cgttgtaaac
1451 ctggatacac gttcacatct attaccctaa agccaccaaa aatagaccgt
1501 gggtcttatt atggtaaaag gttgttatta cctgattcag tcacggaata
1551 tgataagaaa cttgtttcgc gcattcaaat tcgagttaat cctttgcgca
1601 aatttgattc taccgtgtgg gtgacagtcc gtaaagttcc tgcctcctcg
1651 gacttatccg ttgccgccat ctctgctatg tttgcggacg gagcctcacc
1701 ggtactggtt tatcagtatg ctgcatccgg agtccaagct aacaacaaat
1751 tgttgtatga tctttcggcg atgcgcgctg atataggcga catgagaaag
1801 tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagct
1851 ggtacttcat gttgacgtcg agcaccaacg cattcccacg tctggggtgc
1901 tcccagtctg attccgtgtt tccagaaccc tccctccgat ttctgtggcg
1951 ggagctgagt tggcagttct gctataaact gtctgaagtc actaaacgtt
2001 ttacggtgaa cgggttgtcc atccagctta cggctaaaat ggtcagtcgt
2051 ggagaaatcc acgccagtag atttacaaat ctctgaggcg cctttgaaac
2101 catctcctag gtttcttcgg aaggacttcg gtccgtgtac ttctagcaca
2151 ccgtgctagt ttcagggtac aggtgccccc ccactctcgt gggggcctcc
2201 aaaggagacc a