Sequence of DPV Eggplant mottled crinkle virus
Lisianthus necrosis virus, complete genome.
ACC No: DQ011234
Dated: 2006-05-01 | Length: 4764 | CRC: -1760927216
ID DQ011234 standard; genomic RNA; VRL; 4764 BP.
XX
AC DQ011234;
XX
SV DQ011234.1
XX
DT 01-MAY-2006 (Rel. 87, Created)
DT 01-MAY-2006 (Rel. 87, Last updated, Version 1)
XX
DE Lisianthus necrosis virus, complete genome.
XX
KW .
XX
OS Lisianthus necrosis virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4764
RA Jan F.-J., Chang C.-H.;
RT "Complete genome sequence and genetic organization of Lisianthus necrosis
RT virus: suggests it should be re-delineated from Necrovirus into
RT Tombusvirus";
RL Unpublished.
XX
RN [2]
RP 1-4764
RA Jan F.-J.;
RT ;
RL Submitted (18-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, National Chung Hsing University, 250
RL Kuo-Kuang Road, Taichung, Taiwan 402, Taiwan
XX
FH Key Location/Qualifiers
FH
FT source 1. .4764
FT /organism="Lisianthus necrosis virus"
FT /specific_host="lisianthus plant"
FT /isolate="L"
FT /mol_type="genomic RNA"
FT /country="Taiwan"
FT /db_xref="taxon:334425"
FT CDS join(165. .1052,1056. .2621)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1 readthrough protein; ORF1RT"
FT /protein_id="AAY98781.1"
FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT
FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSASDYAIPLALAALPIAPLLGYATKV
FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR
FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK
FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRSIFM
FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGILTRTPQPAKGAFSRLSPFRKAVC
FT EKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHISPVCERDSYLTTFVKAEKISTSKG
FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDKW
FT DKFDRPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYVP
FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEYSLANCGDDCTLIVERK
FT HLKRIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFEGGWKMVRNVRTAMSKD
FT VHCVNNIKDLATRKAWSNAQHHGGIALSAGIPVVEKFYSRFALYEMPKRHQRIDTVTNV
FT HKWRGSGGKYSVTPESRASFWQAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL
FT DSAVA"
FT CDS 165. .1055
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="AAY98780.1"
FT /translation="MDRLLNFLRPKKEIFVGDFAIGVDRRPSMDMFQLVCRLALRYMRT
FT GKIECNVDSLSQFVVELLKTDCAAKWEWFMKRRSASDYAIPLALAALPIAPLLGYATKV
FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGLALAPVCALAVYATLPREKLSVFR
FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK
FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVK"
FT CDS 2647. .3813
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF2"
FT /protein_id="AAY98782.1"
FT /translation="MEIVRRNNNNAIAINKKQLASMAATAAAGALSNYVKNNGAMIVQG
FT AVNMGKKAYGAVRNRRNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSV
FT TVTHREYLTQVNNSPAFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLH
FT YVPLCGTNEVGRVAMYWDKDSEDPEPVDRVELANFGILKETAPWAEAILRVPTDKTKRY
FT CDDSTVVDRKLIDLGQLGISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLT
FT GALEASTGPGYINVTRTPTLLTITFRSTGTFLLSGVFRDTSVAVLGVAGGIGINSQTTL
FT DVVGVATSFLVNCTVSTLPATLTYGSAGITSVTANCTRATRANTATLL"
FT CDS 3845. .4420
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF3"
FT /protein_id="AAY98783.1"
FT /translation="MDTEYEQVNKPWNELYKEATLGNKLTVNVGMEDVEVPLLPSNFLA
FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI
FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPFLEGRELFSVPLRWQFGLSAQCYSLPPAKW
FT KVMYQEEDLKALKPSKKKASKTDSSRLE"
FT CDS 3877. .4395
FT /codon_start=1
FT /product="p19 protein"
FT /note="ORF4"
FT /protein_id="AAY98784.1"
FT /translation="MERAIQGSDAREQAYSERWDGGCGGTITPFKLPGESPSLIEWRLH
FT NSEESEDKDNPLGFKESWSFGKVVFKRYLRYDGTEASLHRALGSWERDTVNDAASRFLG
FT FGQIGCTYCIRFRGSCLTISGGSRTLQRPIEMAIRTKRTMLQLAPCEVEGNVSRGRLEG
FT TEAFKEESE"
XX
SQ Sequence 4764 BP; 1216 A; 1020 C; 1332 G; 1196 T; 0 other;
dq011234 Length: 4764 01-MAY-2006 Type: N Check: 1928 ..
1 agaaattcct cagatttctc cctgtgaccc ggggttatcg gtgagttgcg
51 cttgtgcttt gcgtaaggga tttctctcgt acgggtacga tctacggacc
101 agctacgggt ttgaagggcg ggcctattct tcggaagggt aaattgtaac
151 ttccgccaat aagcatggat agattactga actttctgag acctaagaag
201 gaaattttcg taggtgattt tgcgatcggg gttgacagga ggccatcgat
251 ggacatgttc caattggtgt gtaggttggc tctcagatat atgaggacag
301 ggaaaatcga gtgtaatgtg gacagtcttt cacagttcgt tgttgagttg
351 ttaaagactg attgtgcagc caagtgggaa tggttcatga aacggcgttc
401 cgccagtgat tacgctatcc ctcttgcact ggctgcactg cccattgctc
451 cgctgttggg ctatgccacg aaggttagaa cggtgagtgt aaaggcgttc
501 gggaatgaat tgactttccc attcaggacc cttcgcccaa gtctcccccg
551 taagggcttg ctccttcggc tggcggccgg ccttgcgtta gcacctgtat
601 gcgcgcttgc tgtgtacgct accctaccac gggaaaaact gtctgtattt
651 aggctgagaa cagaagcccg cacacatatg gaggatgaga gggaagcaac
701 ggaatgtttg gtggttgagc cagctcgaga gctcaagggg aaggacgggg
751 aggatctcct cactggtagt agaatgacga aggtaattgc gtctacggga
801 cgccctcgca ggagacctta tgcagctaaa gttgctcagg ttgcaagagc
851 taaggtgggt taccttaaga atagtcctga gaatagatta atctaccaga
901 gagtcattat tgagatcatg gacaaggatt gcgtcaggta tgttgacagg
951 gatgtcatat tgcctttggc tattggatgt tgttttgtct acccggacgg
1001 agtggaggag tcggcggcac tctggggctc tagtgagtcc ctgggtgtga
1051 aatagggagg cctagtgcgt ctacctgggg ttgtgacaca gaccaatcga
1101 gatatcccat ctggtgtgtt acttccccag gaagtgctag aggttcgcac
1151 aggacctccc aatgctaagg accgtagtat attcatggtt gctggttgcc
1201 catcacaggc acggttctta gttcataatc attgcctgaa aaaccttaag
1251 aggggtcttg tggagagagt tttctgtgtt gagagaaacg gaattctcac
1301 tcgcactcca caacctgcca aaggagcctt tagtcgtctt tccccgttca
1351 ggaaagcggt ttgtgagaag gtcggagttg cccaccgtct tgggtatgat
1401 gggtttctat catactacag cggtgcgaag ctgcgtactt acacgcgagc
1451 cgtggagagt ctgcatatct cccccgtctg tgagagggac agttatttga
1501 ctaccttcgt caaggcggag aagatatcga cgtctaaggg tgacccagcg
1551 cctagggtga tacagcctcg taaccctagg tacaatgtgg aacttggaag
1601 atatctgcgg catatggagt ccaaactaat gaaagctgta gatggcgtgt
1651 ttggtgaaac gacatgcatt aagggctaca ccgctgatga ggtggggcag
1701 atctttaggg acaagtggga caaatttgat cgtccagtcg ctattggtct
1751 tgatgcctca cggtttgatc aacactgttc ggttgaagcg ttgcaatttg
1801 agcatagctt ctacagggcc atgtaccctg gcaacaagct cttgagcaag
1851 ttgctcgaat ggcaactcca caataaaggg aaaggatatg tgcctgatgg
1901 cactatcacc tatcgtaagg agggttgtcg catgagtggg gatataaaca
1951 catcacttgg taattacctg ttaatgtgtg ccatgattta tggttatatg
2001 cgccatttgg ggatcaatga gtatagtctg gcgaactgtg gggatgattg
2051 cactctcatt gtggaacgca agcatcttaa acggatacaa ggtacactac
2101 ccgagtattt cctaaatctg ggttatacta tgaaggtgga accccctgta
2151 tttcaattgg aggaggttga attctgccag gcacacccag tacagtttga
2201 aggtggttgg aagatggtcc ggaatgtccg taccgctatg agcaaggatg
2251 tacactgtgt caacaatatt aaagatctgg ctacacgcaa ggcgtggagt
2301 aatgcacaac accatggtgg tatagcactt agtgctggca tacccgtggt
2351 agagaagttt tactcccggt tcgctttgta tgagatgcca aagagacacc
2401 aaagaattga cacagtcaca aacgtgcaca agtggcgtgg atcgggtgga
2451 aagtatagtg tgacccctga gtcaagggca agcttttggc aagcctttgg
2501 cctgacgggg gatgagcagc ttgctttaga ggaccgtctg gatagatggg
2551 agatggacct atttggagaa gagggtgttg acgctcatga gcccagcatc
2601 cttgactccg ccgtagcttg accaagtgaa cacaagcgac atagcaatgg
2651 aaatcgttag gagaaacaat aataatgcaa tcgcgatcaa taagaaacag
2701 ctggcctcta tggcggctac tgccgccgct ggggctctga gcaattatgt
2751 gaagaacaat ggagcaatga ttgtacaagg tgcggtgaat atgggcaaga
2801 aagcttatgg agcagtaagg aatcgtagga ataagggtaa ttcacaggcg
2851 atggtgcacg taggtggtat gggcggggct atgatggccc ctgtggcagt
2901 atcccggcaa cttgtgggca gtaagccaaa gttcgcaggt aggactgctg
2951 gatcagtcac agtcacccac cgtgagtact taacccaggt gaacaactcc
3001 cctgctttta caaccaatgg aggtattgtc gggaatttgt tacaactcaa
3051 cccgcttaat ggcacactgt tttcgtggtt accggctatc gcgtcgaact
3101 tcgatcagta cgtctttaac agcgttgtgt tgcattatgt ccccctctgt
3151 ggcacaaatg aagtagggcg tgttgcaatg tactgggata aggactctga
3201 ggatcctgag cctgtggata gagtggaatt agctaatttc ggtatactta
3251 aagagacggc cccatgggcc gaagctattc tgagggtccc aactgataag
3301 acgaaacgat actgcgatga cagtacagtg gttgacagga agcttatcga
3351 cctcggacag ctcggaatat ctacatatgg agggaccgga actaatcctg
3401 tgggggatgt gtttgtgtcg tatagcgtta cgctttactt cccacaaccc
3451 acgaataccc tactcagcac acgacagctt agccttactg gcgccctaga
3501 agcatctact gggcccggat atattaacgt aacacgtaca ccaacgctct
3551 tgacaataac attcaggtct accggaactt tcctgctttc gggggttttc
3601 cgggatacta gtgttgctgt tcttggtgtg gcggggggca taggaattaa
3651 tagtcagacc acacttgatg ttgttggcgt agccacatca ttccttgtga
3701 actgtacagt gtccacacta cccgctacac tcacatatgg atctgctggg
3751 ataacatctg tcactgcgaa ttgcacacgg gccacaaggg ccaacaccgc
3801 aacattgcta tagtcgcctc ggggcctctt gaacagacca gtttatggat
3851 actgaatacg aacaagtcaa taaaccatgg aacgagctat acaaggaagc
3901 gacgctaggg aacaagctta cagtgaacgt tgggatggag gatgtggagg
3951 taccattact cccttcaaac ttcctggcga aagtccgagt ctcattgagt
4001 ggaggctaca taacagtgag gagagtgagg ataaagataa tccccttggt
4051 ttcaaggaaa gctggagttt cgggaaagtt gtatttaaga gatatctcag
4101 atacgacggg acggaagctt cattgcacag agctcttgga tcttgggaaa
4151 gagatacggt taacgatgca gcatctagat ttctcggttt cggccagatc
4201 ggatgtacct attgtattcg gtttcgagga tcttgtctca ccatttctgg
4251 agggtcgcga actcttcagc gtcccattga gatggcaatt cggactaagc
4301 gcacaatgtt acagcttgcc ccctgcgaag tggaaggtaa tgtatcaaga
4351 ggaagacttg aaggcactga agccttcaaa gaagaaagcg agtaagacag
4401 actcttcacg cttggagtga agtttggtgg cagctataca ccttagacca
4451 ctggttacta ctgtcaggtt ggaacccaca ctaattgagc taggccgggc
4501 cccgtcgtag gtttggtcac ctacggaatg gggatatgga aaggatctcg
4551 taccctgtga gtcaaacgaa agttgtgctt gggatatggg tctatgccta
4601 gtaggttatg tggtgtgtct ctgactttaa ttggatgcca gttttcaaca
4651 ggagtggcag cgactgaaca acactttgag cacggttgat ctcatccttc
4701 gggggggcta tagagatcac cggaagcact accggacaac cggaacattg
4751 cagaaatgca gccc