Sequence of DPV Cocksfoot streak virus
Cocksfoot streak virus isolate UK-1-04 FHCP16A HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: DQ065614
Dated: 2005-06-20 | Length: 1371 | CRC: 375138149
!!NA_SEQUENCE 1.0
ID DQ065614 standard; genomic RNA; VRL; 1371 BP.
XX
AC DQ065614;
XX
SV DQ065614.1
XX
DT 20-JUN-2005 (Rel. 84, Created)
DT 20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE Cocksfoot streak virus isolate UK-1-04 FHCP16A HC-Pro protein (HC-Pro)
DE gene, partial cds.
XX
KW .
XX
OS Cocksfoot streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT "The dynamics of selection pressures acting on a viral suppressor of RNA
RT silencing in the field";
RL Unpublished.
XX
RN [2]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT ;
RL Submitted (17-MAY-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL Road, Oxford OX1 3SR, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .1371
FT /country="United Kingdom:England"
FT /db_xref="taxon:192452"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Cocksfoot streak virus"
FT /isolate="UK-1-04 FHCP16A"
FT /isolation_source="Wytham Woods Yellow Ant Reserve,
FT Oxfordshire"
FT gene <1. .>1371
FT /gene="HC-Pro"
FT CDS <1. .>1371
FT /codon_start=1
FT /note="helper component proteinase"
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="AAY79357.1"
FT /translation="SQGEEFWAGFNETFVAKRKDPKHTGECRARDTVRQCGEAAGILWQ
FT GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLECLRIQPSMSCTLNALATK
FT LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT FIKNRRDGLVRGDVREFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT YTQVNVADDYDAHVLRKHPKGTRRLAIDRLILQLDLKALQEHVVGFPIERTPITSSCIS
FT KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDCPETYRDKLWIARD
FT GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT QAELPRILVDHKNEMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ Sequence 1371 BP; 423 A; 295 C; 312 G; 341 T; 0 other;
DQ065614 Length: 1371 June 28, 2005 08:34 Type: N Check: 1220 ..
1 tcgcagggtg aggaattttg ggccggcttc aacgaaacat ttgttgctaa
51 gaggaaagat cctaagcaca caggcgaatg tagggctcgc gacactgtga
101 gacaatgcgg ggaagcagct ggtatccttt ggcaaggaat gtttccgtgc
151 ttcaagataa cgtgtggagc ttgtcaagat cagatcggaa taacagctga
201 cgacattgtc aaaggtgagc tcatcgacaa tttgtttgaa gcatcagcaa
251 accttgaatg cttacgaatc caacccagta tgtcatgcac tctcaatgct
301 ctcgcgacca agctcaaacc agctcaagat catgtgcaaa tttgccagca
351 aattattcag gcgattggtg atgacaacga tggaccagcg agacatctgc
401 gcttagccac tgaaaaattc atcactttgc aagcatcaga tgccgagaag
451 tgcagtgata tttcaaagaa ccttctgcta gttgcgaact ttattaagaa
501 cagaagagat ggtcttgtgc gcggcgatgt tagagagttc aagaacaaga
551 tatctaacaa agcacacgtt aaccccgttc tcatgtgtga caatcaacta
601 gacgccaatg gaaattttgt atggggggaa agaagtcatc atgcaaaacg
651 attcttcgat aacttctaca cgcaagtcaa cgtagctgat gattacgatg
701 cacacgtttt gaggaaacac ccgaaaggca ctcgcagatt agcaatcgat
751 cgcttaattc tacaactgga cttgaaagct cttcaagaac atgtggtggg
801 attcccaatt gagcgaacac ctataacttc atcatgcata agcaagaaat
851 atggcgcctt tgtgttcaca tgtagttgca tcacacttga tgataaaaca
901 ccactctatt cagatatcat catgcccacg aagcagcatt tggtcatcgg
951 aaactcaggg gattcgaagc tcatcgactg tcctgagacg taccgagaca
1001 aattgtggat tgcaagagat ggatattgct acgtcaacat tttcctcgct
1051 atgttggtca atattaatga agttgacgct aagaatttta ccaagacaat
1101 tcgcgatcgt gtgataccac aactaaagga atggccaacc atgagagacc
1151 tggcagctag cttgcacatg ttgacagtct tatttccaga tacgagacaa
1201 gctgaactac cacgcatact ggttgatcac aagaatgaaa tgatgcatgt
1251 cgttgattca tatggctcga gtgatatcgg atttcacata ctcaaagctg
1301 gaacggttag tcaactgcta ccgttcatgt ttgactccac tgaaggggaa
1351 atgaaaaatt accaggtcgg c