Sequence of DPV Cocksfoot streak virus
Cocksfoot streak virus isolate UK-1-04 GHCP630C HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: DQ067582
Dated: 2005-06-20 | Length: 1371 | CRC: -50753197
!!NA_SEQUENCE 1.0
ID DQ067582 standard; genomic RNA; VRL; 1371 BP.
XX
AC DQ067582;
XX
SV DQ067582.1
XX
DT 20-JUN-2005 (Rel. 84, Created)
DT 20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE Cocksfoot streak virus isolate UK-1-04 GHCP630C HC-Pro protein (HC-Pro)
DE gene, partial cds.
XX
KW .
XX
OS Cocksfoot streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT "The dynamics of selection pressures acting on a viral suppressor of RNA
RT silencing in the field";
RL Unpublished.
XX
RN [2]
RP 1-1371
RA Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT ;
RL Submitted (19-MAY-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL Road, Oxford OX1 3SR, Uk
XX
FH Key Location/Qualifiers
FH
FT source 1. .1371
FT /country="United Kingdom:England"
FT /db_xref="taxon:192452"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Cocksfoot streak virus"
FT /isolate="UK-1-04 GHCP630C"
FT /isolation_source="Wytham Woods Yellow Ant Reserve,
FT Oxfordshire"
FT gene <1. .>1371
FT /gene="HC-Pro"
FT CDS <1. .>1371
FT /codon_start=1
FT /note="helper component proteinase"
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="AAY79358.1"
FT /translation="SQGEEFWAGFNETFVAKRKDPAHTGECRARDTVRQCGEAAGILWQ
FT GMFPCFKITCGACQDQIGITADDIVKGELIDNLFDASANLERLRIQPSMSSTLKAVATK
FT LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT FIKNRRDGLVRGDVKEFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT YTQVNVADDYDAHVLRKHPRGTRRLAIDRLILQLDLKALQEHVVGFPIEREPVSSSCIS
FT KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPGTR
FT QAELPRILVDHKNKMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ Sequence 1371 BP; 421 A; 292 C; 320 G; 338 T; 0 other;
DQ067582 Length: 1371 June 28, 2005 08:34 Type: N Check: 6592 ..
1 tcgcaggggg aagaattctg ggcaggcttc aatgagacat ttgttgccaa
51 aaggaaagat cctgcacata cgggtgagtg tagagctcgc gacactgtga
101 gacaatgtgg tgaagcagct ggcattcttt ggcaagggat gtttccgtgc
151 ttcaagataa cgtgtggagc ttgtcaagat cagatcggaa ttacagctga
201 cgatatcgtc aaaggtgagc tcatcgacaa tttgtttgac gcatctgcga
251 accttgagcg tttacgaatc caacccagca tgtcaagcac tctgaaagcc
301 gtcgcaacta aactcaaacc agctcaggat catgtgcaaa tttgccagca
351 aattatccag gcaattggtg atgacaacga tggaccagcg agacatctgc
401 gcttagctac tgagaaattc ataaccttgc aagcatcaga cgccgagaag
451 tgcagtgaca tttcaaagaa ccttctgtta gtcgcaaact tcattaagaa
501 cagaagagat ggtcttgtac gtggcgatgt caaagagttc aagaacaaga
551 tatccaacaa agcgcatgtt aaccctgtcc tcatgtgtga taatcaacta
601 gatgccaacg gaaactttgt atggggggaa agaagtcatc atgcaaaacg
651 attctttgac aatttctata cgcaagtgaa cgtagctgat gattacgacg
701 cgcatgtctt gagaaaacac ccgagaggca ctcgcagatt agcaattgat
751 cgattgattc tgcaactgga cttgaaggct cttcaggaac acgttgtggg
801 attcccaatt gagcgggaac ctgtatcttc atcatgcata agcaagaaat
851 acggagcctt tgtgttcacg tgcagttgca tcacacttga tgataaaaca
901 ccactctact cagatatcat catgcccacg aagcaacact tagttatcgg
951 aaactcagga gattcaaagc tcattgattt ccctgagaca taccgagata
1001 aattgtggat cgcaagagat gggtactgct acgttaatat tttccttgcc
1051 atgttggtga atattaatga agttgatgcc aagaacttca ctaagacaat
1101 tcgagatcgc gtgataccac agctgaagga atggccaacc atgagagatc
1151 tggcagctag tttacatatg ttaacagtct tgttccctgg tacaagacag
1201 gccgaactac cacgcatact tgttgatcac aaaaacaaaa tgatgcatgt
1251 cgtggactca tatggctcaa gtgacattgg atttcatata ctcaaagctg
1301 gaacagtcag ccaattgttg ccattcatgt ttgactcaac cgagggcgaa
1351 atgaagaact accaggtggg g