Sequence of DPV Rice stripe virus
Rice stripe virus isolate SD-JN2 segment RNA3, complete sequence.
ACC No: DQ108406
Dated: 2005-07-21 | Length: 2487 | CRC: 239446835
!!NA_SEQUENCE 1.0
ID DQ108406 standard; genomic RNA; VRL; 2487 BP.
XX
AC DQ108406;
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SV DQ108406.1
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DT 21-JUL-2005 (Rel. 84, Created)
DT 21-JUL-2005 (Rel. 84, Last updated, Version 1)
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DE Rice stripe virus isolate SD-JN2 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2487
RA Zhu C., Wen F.;
RT "Cloning of Rice stripe virus RNA3 segment";
RL Unpublished.
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RN [2]
RP 1-2487
RA Zhu C., Wen F.;
RT ;
RL Submitted (27-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL College of Life and Science, Shandong Agricultural University, Daizong
RL Street No. 61, Taian, Shandong 271018, China
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FH Key Location/Qualifiers
FH
FT source 1. .2487
FT /country="China"
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /organism="Rice stripe virus"
FT /isolate="SD-JN2"
FT /specific_host="rice"
FT /segment="RNA3"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="putative replication protein"
FT /protein_id="AAZ13597.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT gene complement(1427. .2395)
FT /gene="CP"
FT CDS complement(1427. .2395)
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="AAZ13598.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
XX
SQ Sequence 2487 BP; 756 A; 531 C; 433 G; 767 T; 0 other;
DQ108406 Length: 2487 August 1, 2005 11:49 Type: N Check: 1209 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcaccct aggctccttc ttgaaaactt
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gattccctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaaaga aataagaaaa taaacaaatg atcaaaaaaa
751 cacaaaaaaa tcttaaaaat gaaaaacaca aaaaaccaaa aaactaaaaa
801 aaaccaaaaa acatcatgac ctaagaaact tcacaccact ggttgtctag
851 tgggctctag ttggtagaga aagctatgct tttgcctaaa gccatgattg
901 gccaatcctt aaaatgtgct aagcacatta tccgaggatg tctcggatgt
951 ttttttacct aacctaattt ttttgtattt ttatataatt tttttgattt
1001 ttttgatttt tttgtatttt acatacatat ttttgttttt tgattttttt
1051 gttttttaat attttttctt ccaattacta cattactata tttgattatt
1101 catatgctta aaatatatag tatgtattat aaaaatagag caatataata
1151 aagctagtat aactacatta caaacatata tctaaatatt tagatagact
1201 tatcaaacta aagactctac tggagagcga gtaataataa tggcaataca
1251 tcacacacaa agcccaaaac cacacagaca aaataactta tggaatataa
1301 ttaaaaacta aaatatacac atataaatat acatattaac ttacacctaa
1351 agaaacaaca cactgtttga agacatgcat cttccaggga gatatgagat
1401 cccccacaac tactgacttg ttcagtctag tcatctgcac cttctgcctc
1451 gtcctcgaag aactccttca ccaacccgct gacttcagat gctgtctttg
1501 aagtgttctc agcaaggatc ttcatcagtt tgctctgttg agccaagtac
1551 agccttgtct gattcccata agtgctgatc gtattgacag acataccagc
1601 cagcgcatcg aagattgtgg tcttcacttt cccattggtg atgaattcat
1651 ctaagacctt ctttctgcca tcttccttct tcttgtcagc caggttcttt
1701 gacttgcatg tgatgaccag gagaccagtt gtgtacttca tcatgtctat
1751 gtcttttgtc agaccacgct ccttcttctt accctctggc atggtctttt
1801 tggttatctg gaaggagtga atgatgtgca caacaaacaa aatgtgactt
1851 agggagtgag ttgtgcagta aggagctgtt tcactctcca gtttgatata
1901 ttgtggaaca tagtcccaca gtaagttgtc acatcctgtt agtcccaggt
1951 cagaagagtc cacagccatc ttaacaccag agatttgtct cacaacttca
2001 tgtgagacat ttgggaatag ctgagccagc cttccaagtg tgatagcatt
2051 ggcattagtt cccaccgagg acactatccc atacctcgac accagggtcg
2101 aagcctctgt gcttccagct gccactttca ctttcttagt gacatctctc
2151 acaaagccag tgcctctcac atatctcatg gtgatgcaca tagtcatatc
2201 cttggccagt gtgtcaccac ctttgtcctt caatatgcca atcagagttg
2251 cagcatcata gcctgcatac tctatctgac cagcaaaggt cacaacatca
2301 gctttatgag cagtcaggta agacaacgca tctttggaga tgtcattgat
2351 tgccttctgc aaatcagcta gagtggctgg cttgttggtg cccattgtag
2401 caagaggtac tggaggaatg gttgcggctt agatgaaatt tggaatgtaa
2451 aagcaaaatc gaaaatttta ttacccagac tttgtgt