Sequence of DPV Arabis mosaic virus large satellite RNA

Arabis mosaic virus isolate NW satellite-encoded protein mRNA, complete cds.

ACC No: DQ187317

Dated: 2006-02-18 | Length: 1139 | CRC: -1856164928

                
ID   DQ187317   standard; mRNA; VRL; 1139 BP.
XX
AC   DQ187317;
XX
SV   DQ187317.1
XX
DT   18-FEB-2006 (Rel. 86, Created)
DT   18-FEB-2006 (Rel. 86, Last updated, Version 1)
XX
DE   Arabis mosaic virus isolate NW satellite-encoded protein mRNA, complete
DE   cds.
XX
KW   .
XX
OS   Arabis mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1139
RA   Wetzel T., Bassler A., Amren M.A.W., Krczal G.;
RT   "A RT/PCR-partial restriction enzymatic mapping (PREM) method for the
RT   molecular characterisation of the large satellite RNAs of Arabis mosaic
RT   virus isolates";
RL   J. Virol. Methods 132(1-2):97-103(2006).
XX
RN   [2]
RP   1-1139
RA   Wetzel T., Bassler A., Wahab A.M.A.B., Krczal G.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   AlPlanta - Institute for Plant Research, RLP Agroscience GmbH, Breitenweg
RL   71, Neustadt an der Weinstrasse 67435, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1139
FT                   /country="Germany:Neustadt an der Weinstrasse"
FT                   /db_xref="taxon:12271"
FT                   /mol_type="mRNA"
FT                   /organism="Arabis mosaic virus"
FT                   /isolate="NW"
FT                   /specific_host="grapevine 'Pinot gris'"
FT   CDS             15. .1064
FT                   /codon_start=1
FT                   /product="satellite-encoded protein"
FT                   /protein_id="ABB03714.1"
FT                   /translation="MALMQPQKQPSLTHSPRVPMELLVPTEYARLFSKKQLERMLALAC
FT                   KHRARQAAQAVSKRTSRDRNGSKIMGQGPSAVAPRVSLGHKQQSDGGASLTPMKSKRAV
FT                   RRARRRAAAKKAKAKTGTLPVQKVGPLRVQAAGSTGRASYLSSLVSGASLSKTKMEVVS
FT                   SPPQTKRAPSVDKGGFTLTSLTPAEARERAGRSFHPITGSFRSGNEALNAFCARSRGGC
FT                   GECKACVDRYCSLRFVRSFDQIGTSRVIQVEAVNNDPAGEMDSPSATEPSGFWAPAEMQ
FT                   APSGEGRSLKRCDVVTLARVTPVLRMLRRADPTLVDSKLLWESAFRTVFPQRKCAYPYG
FT                   CFTSGSSRG"
XX
SQ   Sequence 1139 BP; 246 A; 295 C; 337 G; 261 T; 0 other;

dq187317 Length: 1139  18-FEB-2006  Type: N  Check: 2320  ..

       1  atgaaaaatt ttctatggct cttatgcaac cgcagaagca gccatctttg
      51  actcactcac caagagttcc tatggaactc ttggtaccta ccgagtatgc
     101  tagactgttt tccaagaaac agctcgagcg catgctcgca ttggcgtgta
     151  agcaccgtgc acgtcaagct gctcaggcag taagcaaacg gacctcccga
     201  gaccgaaatg ggagtaaaat aatgggtcag ggtccttctg ctgtggcccc
     251  gcgagtgtcg cttggacaca aacagcagtc tgacggaggg gcgagtctaa
     301  ccccgatgaa gtcgaagcgt gcggtgcggc gtgcaaggcg ccgtgctgcc
     351  gctaaaaagg cgaaagccaa gaccgggacc ttacccgtac aaaaggttgg
     401  gccattgcgt gtccaagctg cggggtctac gggccgggcg agctatttgt
     451  ctagcctggt ttcaggggct tccctcagca aaaccaaaat ggaggtggtg
     501  agctcacctc cccaaacaaa aagagctccc agcgtcgata agggtggttt
     551  cacccttact tccctcacac cggctgaggc ccgggagagg gctgggcgca
     601  gtttccaccc cattacgggt tctttccgat ctgggaatga ggcccttaat
     651  gcgttctgcg cccgctctcg tggcggatgc ggcgagtgca aggcctgtgt
     701  ggacaggtat tgctccctgc ggttcgttag gagctttgat cagattggca
     751  cttcgcgtgt cattcaggtc gaagctgtga ataacgatcc agccggagag
     801  atggatagcc ctagtgctac ggaaccttct gggttctggg ctcctgcaga
     851  aatgcaggct ccttcgggag aggggcgatc ccttaaaagg tgcgacgtgg
     901  tgacactcgc acgcgtgaca cccgttttac ggatgttacg tagagctgac
     951  cccactctcg tggacagcaa acttttatgg gaatccgctt tccggacggt
    1001  ttttcctcag cgcaagtgcg cgtatcctta tggttgcttc acgagtggga
    1051  gtagccgtgg gtagggaaaa ctgaaggtgg gacttcgttt gtttatagtc
    1101  tggcgcaagc tgggattttg gttgctcatt agccaactc