Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus strain Petrolina de Goias segment DNA-A, complete sequence.
ACC No: DQ207749
Dated: 2005-10-11 | Length: 2593 | CRC: -737239074
!!NA_SEQUENCE 1.0
ID DQ207749 standard; circular genomic DNA; VRL; 2593 BP.
XX
AC DQ207749;
XX
SV DQ207749.1
XX
DT 11-OCT-2005 (Rel. 85, Created)
DT 11-OCT-2005 (Rel. 85, Last updated, Version 1)
XX
DE Tomato severe rugose virus strain Petrolina de Goias segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2593
RA Bezerra-Agasie I.C., Ferreira G.B., Avila A.C., Inoue-Nagata A.K.;
RT "First report of Tomato severe rugose virus in chili pepper in Brazil";
RL Unpublished.
XX
RN [2]
RP 1-2593
RA Bezerra-Agasie I.C., Inoue-Nagata A.K.;
RT ;
RL Submitted (16-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Biologia Molecular, EMBRAPA Hortalicas, BR 060 - km 09 - CP
RL 218, Brasilia, DF 70359-970, Brazil
XX
FH Key Location/Qualifiers
FH
FT source 1. .2593
FT /country="Brazil"
FT /db_xref="taxon:158463"
FT /mol_type="genomic DNA"
FT /organism="Tomato severe rugose virus"
FT /strain="Petrolina de Goias"
FT /specific_host="chili pepper"
FT /segment="DNA-A"
FT gene 171. .926
FT /gene="AV1"
FT CDS 171. .926
FT /codon_start=1
FT /note="CP; AR1"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ABA61316.1"
FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY
FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(923. .1321)
FT /gene="AC3"
FT CDS complement(923. .1321)
FT /codon_start=1
FT /note="AL3"
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="ABA61317.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY
FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN
FT VIRAVRFATDKSYVNAVLENHSIKFKFY"
FT gene complement(1068. .1457)
FT /gene="AC2"
FT CDS complement(1068. .1457)
FT /codon_start=1
FT /note="transactivator protein; AL2"
FT /gene="AC2"
FT /product="TrAP"
FT /protein_id="ABA61318.1"
FT /translation="MRNSSSLTPPSIKVQHRVAKKRGIRRRRIDIECGCSIYVHIDCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI
FT ASPQELPQLPDMDDFTDSFWDDIFN"
FT gene complement(1399. .2457)
FT /gene="Rep"
FT CDS complement(1399. .2457)
FT /codon_start=1
FT /note="replication initiation protein; AC1; AL1"
FT /gene="Rep"
FT /product="Rep"
FT /protein_id="ABA61319.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDSFGRGAAARPERPISIIIE
FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA
FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL
FT NTPLYQGTTQSC"
FT gene complement(2040. .2303)
FT /gene="AC4"
FT CDS complement(2040. .2303)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ABA61320.1"
FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSNPMSIRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP"
XX
SQ Sequence 2593 BP; 665 A; 531 C; 599 G; 798 T; 0 other;
DQ207749 Length: 2593 October 18, 2005 11:30 Type: N Check: 6164 ..
1 accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag
51 tgattgtctg tggcccaatc atattgggcc tgtcgagctt agatatttgt
101 aacaagttaa ggcccaattt gttgaacggc tataaattga acatacactt
151 tacttttgct ttaattcaaa atgcctaagc gtgatgcccc atggcgttta
201 acggcgggaa cttcaaaggt ttcccgctct gtcaattatt ctccccgtgc
251 aggatatgga cccaaatata ataaggccgc tgagtgggtg aacaggccca
301 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct
351 agaggctgtg aagggccttg taaggttcag tcttacgagt ctcgtcatga
401 tgtttcccat gtcgggaagg tgatttgtgt gtctgacgtt acacgtggta
451 acggtattac tcaccgtgtt ggtaagcgtt tctgcgtgaa gtctgtatat
501 attttaggga aggtatggat ggacgagagc atcaagttga agaatcacac
551 aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac
601 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact
651 gcaactgtta agaacgatct tcgggatcgt tttcaggtca tgcacaagtt
701 ttatgccaag gttactggtg gacagtatgc cagtaatgag caggcattag
751 tgaagcgctt ttggaaggtc aacaacaacg tagtctacaa ccatcaggag
801 gcagggaaat acgagaatca tactgagaac gccttgctat tgtatatggc
851 atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct
901 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga
951 ttttcgagta cagcatttac atatgatttg tctgttgcaa aacgaacagc
1001 tctgattaca ttattaatgg aaataacgcc taatcgatct agatacaata
1051 agactaaata tttaaatcta gttaaatatg tcgtcccaga agctgtcagt
1101 gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga gatgcaatgc
1151 tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg
1201 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt
1251 gatatctccc aaatataaac gccattctct gcctgacgtg cagtgatgag
1301 ttcccctgtg cgtgaatcca tgtcctctgc agtcgatgtg tacgtaaata
1351 gagcacccgc actctatatc aattcgtcgt ctcctgattc ctcgtttttt
1401 agcaactctg tgttgtacct tgatagaggg gggtgttaag gaagacgaat
1451 ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc
1501 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc
1551 atgggatacc acctttaatt tgaactggct ttccgtattt gcagtttgat
1601 tgccaatcct tttgggcccc aagcaattct ttccagtgct ttaactttag
1651 atagtgcggt gcgatgtcat caatgacgtt atattcaaca tgatttgaat
1701 aaaccctagg attgaaatct aggtgtccac tcaaataatt atgggcccct
1751 aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat
1801 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaagagt
1851 catctgccca agcttgcatc tctctcggta cgctagtgaa agaggagagg
1901 ggaaacgtag gggcccatgg ctccggagcc cttgtaaata tcctatctaa
1951 attactattt agattgtgaa actgaaataa gaacttttca ggcagcttct
2001 cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt caaggcttct
2051 gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc
2101 gatttggaat tccccccact cgatagtatc tccgtcctta tcgacatagg
2151 atttgacgtc ggacgatgac ttagctctct gaatgttcgg atggaaatgt
2201 gttgaccttg ttggggagac caggtcgaag aatcgttgat tttggcagca
2251 gtagttgccc tcaaattgaa gaagcacgtg gagatgaggc tccccatttt
2301 catggagctc tctgcaaacc ttgatgaact tcttatttgt aggagtgttt
2351 agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg
2401 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg
2451 atggcatatt tgtaaatatg acccttacta ccaaatggta gctgctctaa
2501 aactcatatc aattggtagt tatggtagct cttatatagt agaagttctc
2551 tttaaggaga ttgctacacg tggcggccat ccgttataat att