Sequence of DPV Rice stripe virus

Rice stripe virus isolate BCP2-04 coat protein gene, complete cds.

ACC No: DQ299151

Dated: 2008-07-16 | Length: 969 | CRC: -1029099620

                
ID   DQ299151; SV 1; linear; genomic RNA; STD; VRL; 969 BP.
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AC   DQ299151;
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DT   07-DEC-2005 (Rel. 86, Created)
DT   16-JUL-2008 (Rel. 96, Last updated, Version 3)
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DE   Rice stripe virus isolate BCP2-04 coat protein gene, complete cds.
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KW   .
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-969
RX   PUBMED; 18586332.
RA   Zhang X., Wang X., Zhou G.;
RT   "A one-step real time RT-PCR assay for quantifying rice stripe virus in
RT   rice and in the small brown planthopper (Laodelphax striatellus Fallen)";
RL   J. Virol. Methods 151(2):181-187(2008).
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RN   [2]
RP   1-969
RA   Zhang S., Li L., Wang X.;
RT   "Molecular variability of the coat protein gene of Rice stripe virus in
RT   China";
RL   Unpublished.
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RN   [3]
RP   1-969
RA   Zhang S., Li L., Wang X.;
RT   ;
RL   Submitted (16-NOV-2005) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Plant Protection, China Academy of Agricultural Sciences, No.2
RL   Yuanmingyuan West Street, Beijing, Beijing 100094, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .969
FT                   /organism="Rice stripe virus"
FT                   /isolate="BCP2-04"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12331"
FT   CDS             complement(1. .969)
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8JRD1"
FT                   /db_xref="InterPro:IPR008864"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JRD1"
FT                   /protein_id="ABB96457.1"
FT                   /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT                   YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT                   YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT                   PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT                   TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT                   LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ   Sequence 969 BP; 230 A; 252 C; 195 G; 292 T; 0 other;

dq299151 Length: 969  16-JUL-2008  Type: N  Check: 9055  ..

       1  ctagtcatct gcaccttctg cctcgtcctc gaagaactcc ttcaccaacc
      51  cgctgacttc agatgctgtc tttgaagtgt tctcagcaag gatcttcatc
     101  agtttgctct gttgagccaa gtacagcctt gtctgattcc cataagtgct
     151  gatcgtattg acagacatac cagccagcgc atcgaagatt gtggtcttca
     201  ctttcccatt ggtgatgaat tcatctaaga ccttctttct gccatcttcc
     251  ttcttcttgt cagccaggtt ctttgacttg catgtgatga ccaggagacc
     301  agttgtgtac ttcatcatgt ctatgtcttt tgtcagacca cgctccttct
     351  tcttaccctc tggcatggtc tttttggtta tttggaagga gtgaatgatg
     401  tgcacaacaa acaaaatgtg acttagggag tgagttgtgc agtaaggagc
     451  tgtttcactc tccagtttga tatattgtgg aacatagtcc cacagtaagt
     501  tatcacatcc tgttagtccc aggtcagagg agtccacagc catcttaaca
     551  ccagaaattt gtctcacaac ttcatgtgag acatttggga atagctgagc
     601  cagccttcca agtgtgatag cattggcatt tgtccccacc gaggacacta
     651  tcccatacct cgacaccaag gttgaagcct ctgtgcttcc agccgccact
     701  ttcactttct tagtgacatc tctcacaaag ccagtgcctc tcacatatct
     751  catggtgatg cacatagtca tatccttggc caatgtgtca ccacctttgt
     801  ccttcaatat gccaatcaga gttgcagcat catagcctgc atactctatc
     851  tgaccagcaa aggtcacaac atcagcctta tgagcagtca ggtaagacaa
     901  cgcatctttg gagatgtcat tgattgcctt ctgcaaatca gctagagtgg
     951  ctggcttgtt ggtacccat