Sequence of DPV Tomato yellow spot virus
Tomato yellow spot virus segment DNA-B, complete sequence.
ACC No: DQ336351
Dated: 2006-01-19 | Length: 2626 | CRC: 206232399
ID DQ336351; SV 1; circular; genomic DNA; STD; VRL; 2626 BP.
XX
AC DQ336351;
XX
DT 19-JAN-2006 (Rel. 86, Created)
DT 19-JAN-2006 (Rel. 86, Last updated, Version 1)
XX
DE Tomato yellow spot virus segment DNA-B, complete sequence.
XX
KW .
XX
OS Tomato yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2626
RA Calegario R.F., Ferreira S.S., Andrade E.C., Zerbini F.M.;
RT "Biological and molecular properties of Tomato yellow spot virus (ToYSV), a
RT new tomato-infecting begomovirus from Brazil";
RL Unpublished.
XX
RN [2]
RP 1-2626
RA Calegario R.F., Ferreira S.S., Andrade E.C., Zerbini F.M.;
RT ;
RL Submitted (19-DEC-2005) to the EMBL/GenBank/DDBJ databases.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
XX
FH Key Location/Qualifiers
FH
FT source 1. .2626
FT /organism="Tomato yellow spot virus"
FT /segment="DNA-B"
FT /isolate="[Brazil:Minas Gerais-Bicas2:1999]"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /virion
FT /db_xref="taxon:365523"
FT gene 498. .1268
FT /gene="NSP"
FT CDS 498. .1268
FT /codon_start=1
FT /gene="NSP"
FT /product="nuclear shuttle protein"
FT /db_xref="GOA:Q2LCT7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:Q2LCT7"
FT /protein_id="ABC68293.1"
FT /translation="MYQAKYRRGLSTNYRRNYTRNAVLKRSYGVKFSNVRRRPSNHNRA
FT HEDVKMAAQRIHENQFGPEFVMGHNSAISTFITFPSLGKIEPNRTRSYVKLKRLRFKGT
FT VKIERVQNDVIMDGSAPKIEGVFSLVVVVDRKPHLGSSGCLYTFDELFGARINSHGNLA
FT ITSSLKDRFYIRHVFKRVLSVEKDTLMVDLEGTTSLSNRRFNCWSTFKDIDRDSCNGVY
FT ANISKNALLVYYCWMSDSSSKASTFVSYDLDYIG"
FT gene complement(1340. .2221)
FT /gene="MP"
FT CDS complement(1340. .2221)
FT /codon_start=1
FT /gene="MP"
FT /product="movement protein"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:Q2LCT6"
FT /protein_id="ABC68294.1"
FT /translation="MDSQLVNPPNAFNYIESQRDEYKLSHDLTEIVLQFPSAAAHISAR
FT LSRSCMKIDHCVIEYRQQVPINAAGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SCSFFSLKDPIPWKLYYRVSDTNVHQSIHFAKFKGKLKLSTAKHSVDIAFRAPTVKILS
FT KQFTDRDVDFSHVGYGKWERKLIRSASTVKYGLPSPITIDPGETWASRSTLGIGQSSTE
FT SEVENAAHPYRGLHRLGTTMLDPGDSASIVAARRAQSHITMSEAQINDLVRNAVQECIK
FT TNCIPPEXKSLS"
XX
SQ Sequence 2626 BP; 673 A; 532 C; 608 G; 811 T; 2 other;
dq336351 Length: 2626 19-JAN-2006 Type: N Check: 2673 ..
1 accggatggc cgcccgattt ttgcctccat tgacgtggcg atctggttgc
51 cgctcgatcc ccccttactc gctctcgggg agtttctcct cctgctcacg
101 tggtcccctc acactcgaat ataatttagc gcttttttga aatccgcgaa
151 atgagttaag cgcatttttt gagatccgta gactggtcaa ctattcttga
201 cgctttaatt taaattaaag ccgttttatc cttggtggtc caatcatttc
251 gctcgctggg tgtatcttat ctatttcgcc agattgattc tagaccattt
301 gatattacac ctagtaatac ggtggacgtt ggtacggatc cgtttatttt
351 gtggtgcgaa atagtgtatg acccacagta cgagtaatat gangtgtacc
401 aatagtgtga cctcgtgatg gcagcttaag tcaggaaatg tatatttaaa
451 ctctgtcgtg ctgtgtttgg aatacacgtc ttttcgcgtt tattaatatg
501 tatcaagcca agtatagacg tgggttatct acaaattatc gtcgtaatta
551 cacgcgaaat gccgttctca agcgttctta tggcgtaaag tttagcaatg
601 tgagacgacg tccaagtaat cataacaggg cccatgaaga tgttaagatg
651 gcagcccagc gtatacatga gaaccagttt gggcctgagt ttgttatggg
701 ccataattca gccatttcaa cgtttatcac ctttcctagc ctcggtaaga
751 tcgaacctaa tcgaaccagg tcctatgtca agctaaaacg actccgattt
801 aagggcactg tgaagattga acgtgttcaa aacgatgtca tcatggatgg
851 ttcagccccg aagattgaag gagtcttttc actagtggtc gtggtggatc
901 gtaaacccca cttgggatca tctgggtgtt tgtatacgtt tgacgagtta
951 ttcggtgcca ggatcaacag tcatggcaat ctagccataa catcctcact
1001 gaaagaccgg ttttatattc gacacgtgtt caaacgtgta ttgtctgtgg
1051 agaaggatac gttaatggtt gatcttgaag ggactacatc tctctctaac
1101 aggcgtttta attgttggtc tacgtttaag gatatagacc gtgattcatg
1151 taacggtgtt tatgcaaaca taagcaagaa cgccctctta gtttattact
1201 gctggatgtc ggactcgtcg tccaaggcat cgacatttgt atcgtatgat
1251 cttgattata ttggttaaac agaaaataaa tatgtgaacg ctattaattg
1301 aactcgatta ataacttgtg ttgattacac aaccctctct taactcaatg
1351 atttggsctc tgggggaata caatttgttt ttatacactc ttggaccgca
1401 ttcctcacta ggtcgtttat ttgggcctct gacatggtta tatgcgattg
1451 ggcccttctc gcagcaacta ttgaggccga gtcgcctggg tctaacatgg
1501 tggttcccaa tctgtgtagt cctcgatatg ggtgtgctgc gttctccacc
1551 tctgattccg tactcgattg accgatcccc agcgtactgc gcgaagccca
1601 tgtctcgcct ggatcaattg ttattgggct tggtagccca tacttgacag
1651 ttgaagcgga tctgatcaat ttcctttccc atttcccgta gcccacgtgg
1701 ctgaaatcta catctctatc cgtgaactgt ttagataaga tcttgaccgt
1751 cggtgctcgg aaagcaatat ccaccgaatg tttagccgtc gacagtttca
1801 acttcccctt gaatttcgcg aagtggatgc tctggtgaac attcgtgtcg
1851 ctcactctgt agtacaattt ccacggtatt gggtctttga gggagaagaa
1901 tgaacaggag aaatagtgga gatctatgtt gcatctgatc gggaatgtcc
1951 atgacgcctg taacgattca ttgtccgtca ttctcttgtc gtgaatctcc
2001 acgataacgg aacctgcggc gtttatgggt acctgttgcc ggtattctat
2051 gacgcagtgg tctatcttca tacagctacg gctgagtctg gcgcttatat
2101 gagccgctgc agaaggaaac tgcagaacga tctcagttag atcatgcgaa
2151 agcttatatt catcacgctg agattctata taattaaagg catttggtgg
2201 attaactaac tgagaatcca tttcaactat taatataata aaaataggct
2251 gcgcagctga atgtttcaag tgaattgaag aaggtgaagt gaataaggcg
2301 aaagctcaat agattggcgc cggttaaacg gagacgataa atgtgttagg
2351 gtttcagacg tagtctggat gaatttagaa gaggatgaat attagatatg
2401 aggcgatgga agctgtgtct aacccaattg ttaagtgttt atttatagag
2451 acattggctg gattgcattt ttgtaaataa aggggagtac tctggatggc
2501 atatttgtaa ttcaggggtt gtcaccaatt gagctctctc aaaagtcctt
2551 atgaattggt ggacattggt gtacaatata tactagaagt tcttaagggt
2601 cctatagcgg ccatccgtat aatatt