Sequence of DPV Tomato severe leaf curl virus
Tomato severe leaf curl virus isolate Rioverde-SLP1 segment DNA-A, complete sequence.
ACC No: DQ347946
Dated: 2006-01-29 | Length: 2588 | CRC: 1067907500
ID DQ347946 standard; circular genomic DNA; VRL; 2588 BP.
XX
AC DQ347946;
XX
SV DQ347946.1
XX
DT 29-JAN-2006 (Rel. 86, Created)
DT 29-JAN-2006 (Rel. 86, Last updated, Version 1)
XX
DE Tomato severe leaf curl virus isolate Rioverde-SLP1 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato severe leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2588
RA Mauricio-Castillo J.A., Monreal-Vargas C.T., de la Torre-Almaraz R.,
RA Alpuche-Solis A.G., Arguello-Astorga G.R.;
RT "First Report of Tomato severe leaf curl virus in Mexico";
RL Unpublished.
XX
RN [2]
RP 1-2588
RA Mauricio-Castillo J.A., Arguello-Astorga G.R.;
RT ;
RL Submitted (02-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y
RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP
RL 78231, Mexico
XX
FH Key Location/Qualifiers
FH
FT source 1. .2588
FT /country="Mexico"
FT /db_xref="taxon:92963"
FT /mol_type="genomic DNA"
FT /organism="Tomato severe leaf curl virus"
FT /isolate="Rioverde-SLP1"
FT /segment="DNA-A"
FT gene 185. .940
FT /gene="AR1"
FT CDS 185. .940
FT /codon_start=1
FT /note="CP; capsid protein; encapsidation of viral genome;
FT AV1"
FT /gene="AR1"
FT /product="coat protein"
FT /protein_id="ABC74530.1"
FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY
FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSVLN"
FT gene complement(937. .1335)
FT /gene="AL3"
FT CDS complement(937. .1335)
FT /codon_start=1
FT /note="REn; AC3"
FT /gene="AL3"
FT /product="replication enhancer protein"
FT /protein_id="ABC74533.1"
FT /translation="MDSRTGESITVDQAENSVFIWEVPNPLYFTIISVEDPIYTNTRIY
FT HIQIRFNHNLRKALSLHKAYLNYQIWTTSVQVSGTNYLSRFKYLVLLYLNRLGVICINN
FT VIRAVRFATDRSYVNHVLENHSIKFKFY"
FT gene complement(1082. .1468)
FT /gene="AL2"
FT CDS complement(1082. .1468)
FT /codon_start=1
FT /note="TrAp; transcriptional regulator of late genes;
FT silencing supressor; AC2"
FT /gene="AL2"
FT /product="transactivation protein"
FT /protein_id="ABC74532.1"
FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHINCASH
FT GFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRRPNLHQHQDIPHPNTVQPQPQEGAE
FT STQSVPQLPNLDDISSSFWDELLK"
FT gene complement(1425. .2456)
FT /gene="AL1"
FT CDS complement(1425. .2456)
FT /codon_start=1
FT /note="Rep; RCR-initiator protein; rolling-circle
FT replication initiator; AC1"
FT /gene="AL1"
FT /product="replication initiation protein"
FT /protein_id="ABC74531.1"
FT /translation="MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTY
FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN
FT YITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALNIIRAGDPKTFIVSYHNV
FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES
FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEASYKGFLEKEENKALKDWTLHNAKFIFLNSTL
FT YQA"
FT gene complement(2012. .2377)
FT /gene="AL4"
FT CDS complement(2012. .2377)
FT /codon_start=1
FT /note="AC4"
FT /gene="AL4"
FT /product="AL4"
FT /protein_id="ABC74534.1"
FT /translation="MKLLKCFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT
FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTKCLGVQNQTKTT
FT STTTPSMQLVLERLSTL"
XX
SQ Sequence 2588 BP; 635 A; 556 C; 626 G; 771 T; 0 other;
dq347946 Length: 2588 29-JAN-2006 Type: N Check: 7613 ..
1 accggatggc cgcgtttttt ttggacctgg cccactatca gaaattgcgt
51 tgggccttcc tggataaagt taaccaatca gtacacgttt gggtagtcta
101 attattacta acttggtcac caagttgttt tatggtctat aaatttgtcg
151 ttatgtgtgt ggtccaacca cgcaaatatt gataatgcct aagcgtgatg
201 ccccatggcg cttaatggcg ggtaccccta aggtgagtcg gtcctctaac
251 cagtctccgc ggactggtac tgggcctaaa tttgataagg cccatgcctg
301 ggtaaacagg cccatgtata ggaagcccag gatatatcgg gcttggagaa
351 cgcccgatgt tccaagaggc tgtgaaggcc catgtaaggt ccagtcctac
401 gagcaacgac acgatatctc ccatgtgggg aaagtcatgt gcatatccga
451 tgtcacacgt ggtaatggta ttacccaccg tgttggtaag cggttctgtg
501 ttaagtctgt gtatatcctc ggtaagatat ggatggacga gaacatcaag
551 ctgaagaacc acacgaacag tgtcatgttc tggttagtca gggaccgtag
601 accctatggt acgcctatgg atttcggcca ggtgttcaac atgtttgaca
651 atgagcccag cactgccacg gtcaagaacg atctacgcga tcgttaccag
701 gtcatgcaca agttctatgg caaggtgaca ggtggacagt atgccagcaa
751 cgagcaggct atagtcaagc gattctggag ggtcaacaac catgtggtct
801 acaatcacca agaggctggc aagtatgaga atcacacgga gaacgcgttg
851 ttattgtata tggcgtgtac tcatgcctct aaccctgtat atgctactct
901 taagatccgg atctattttt atgattcggt attgaattaa taaaatttga
951 attttattga atgattttct aatacatgat ttacatatga tctgtccgtt
1001 gcgaagcgaa cagctctgat aacattatta atgcaaataa cacctaacct
1051 atttaaatat aataagacta aatatttaaa tctacttaag taattcgtcc
1101 cagaaacttg aactgatgtc gtccagattt ggtagttgag gtacgctttg
1151 tgtagactca gcgccttcct gaggttgtgg ttgaaccgta tttggatgtg
1201 gtatatcctg gtgttggtgt aaattgggtc ttctacactg attatcgtga
1251 aataaagggg atttggtacc tcccagataa aaacggaatt ctctgcctga
1301 tccacagtga tgctctcccc tgtgcgtgaa tccatggctg gcgcagttga
1351 tgtgctggta gaacgagcag ccacagttta ggtctatcct cttacgacga
1401 atcctggatt ttgcaatttt gtgtttaggc ttgatagagg gtggagttga
1451 ggaagatgaa ttttgcattg tgtagtgtcc aatcttttaa tgctttgttt
1501 tcctcttttt cgaggaaacc tttatagctg gcctctcctg gattgcagag
1551 cacgattgac ggtattcccc ctttaatttg aactggcttc ccgtatttgc
1601 aatttgattg ccaatccttt tgggccccaa tcagctcttt ccaatgcttc
1651 atctttaaat actgcggagt gatgtcatca atgacgttgt actccgcttc
1701 atttgagtaa accctagaat tgaaatctag gtgtccactc aaataattgt
1751 gtgggcctaa ggcacgtgcc cacattgtct ttcccgtcct cgattcaccc
1801 tcgatgatta tacttatagg tctctccggc cgcgcagcgg catccctacc
1851 aaaataatca tctgcccatt cctgcatctc gtccggaacg ttcgtgaacg
1901 acgagagtgg aaacggagga acccagggtt ccggagcctt ctgaaagagc
1951 cgctcgatgt tagctttgac gttatggtag cttacaatga acgtcttggg
2001 gtctccggcc cttataatgt tgagagcctc tccagcacta gctgcattga
2051 cggcgttgtg gtagacgtcg tctttgtttg attttgtacc cccagacact
2101 ttgtattgtc cggattcaca ataatcacct tctttggtga tgtaattctg
2151 gacggcgttg gtgtctttgg ctgcctgtgc gtttggatga aaattggcag
2201 accttctggg gtgagtgagg tcgaaaaatc tagcatcctt gatgttggac
2251 ttcccggaga gttggatgag acagtggagg tgcggaaatc catctgcgtg
2301 ttcctctctg gcgactcgta tgtacgttgg tttgacgact gaccatggca
2351 gattttgaag catttcaata gcttcatctt tggggatatc acactgtgga
2401 tatgttaaga aaatattttt ggcagctagg cgaaataaat tagggttccg
2451 tggcattttt gcaaatatga gccaggacac cagggggagc tctctctaaa
2501 actttatttt gctggtgtcc tggtgtccca tttatactaa aaccctctgg
2551 ggacaccaag ggcaaattcg gccatccgca ataatatt