Sequence of DPV Tomato severe leaf curl virus
Tomato severe leaf curl virus isolate Rioverde-SLP2 segment DNA-A, complete sequence.
ACC No: DQ347947
Dated: 2006-01-29 | Length: 2594 | CRC: -170874893
ID DQ347947 standard; circular genomic DNA; VRL; 2594 BP.
XX
AC DQ347947;
XX
SV DQ347947.1
XX
DT 29-JAN-2006 (Rel. 86, Created)
DT 29-JAN-2006 (Rel. 86, Last updated, Version 1)
XX
DE Tomato severe leaf curl virus isolate Rioverde-SLP2 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato severe leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2594
RA Mauricio-Castillo J.A., Monreal-Vargas C.T., de la Torre-Almaraz R.,
RA Alpuche-Solis A.G., Arguello-Astorga G.R.;
RT "First Report of Tomato severe leaf curl virus in Mexico";
RL Unpublished.
XX
RN [2]
RP 1-2594
RA Monreal-Vargas C.T., Arguello-Astorga G.R.;
RT ;
RL Submitted (02-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y
RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP
RL 78231, Mexico
XX
FH Key Location/Qualifiers
FH
FT source 1. .2594
FT /country="Mexico"
FT /db_xref="taxon:92963"
FT /mol_type="genomic DNA"
FT /organism="Tomato severe leaf curl virus"
FT /isolate="Rioverde-SLP2"
FT /segment="DNA-A"
FT gene 186. .941
FT /gene="AR1"
FT CDS 186. .941
FT /codon_start=1
FT /note="CP; capsid protein; encapsidation of viral genome;
FT AV1"
FT /gene="AR1"
FT /product="coat protein"
FT /protein_id="ABC74535.1"
FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY
FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSVLN"
FT gene complement(938. .1336)
FT /gene="AL3"
FT CDS complement(938. .1336)
FT /codon_start=1
FT /note="REn; AC3"
FT /gene="AL3"
FT /product="replication enhancer protein"
FT /protein_id="ABC74538.1"
FT /translation="MDSRTGESITVDQAENSVFIWEVPNPLYFTIISVEDPIYTNTRIY
FT HIQIRFNHNLRKALSLHKAYLNYQIWTTSVQVSGTNYLSRFKYLVLLYLDRLGVVCINN
FT VIRAVRFATDRSYVNHVLENHSIKFKFY"
FT gene complement(1083. .1469)
FT /gene="AL2"
FT CDS complement(1083. .1469)
FT /codon_start=1
FT /note="TrAp; transcriptional regulator of late genes;
FT silencing supressor; AC2"
FT /gene="AL2"
FT /product="transactivation protein"
FT /protein_id="ABC74537.1"
FT /translation="MQNSSPSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYLHIDCANH
FT GFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLHQHQDIPHPNTVQPQPQEGAE
FT STQSVPQLPNLDDISSSFWDELLK"
FT gene complement(1426. .2460)
FT /gene="AL1"
FT CDS complement(1426. .2460)
FT /codon_start=1
FT /note="Rep; RCR-initiator protein; rolling-circle
FT replication initiator; AC1"
FT /gene="AL1"
FT /product="replication initiation protein"
FT /protein_id="ABC74536.1"
FT /translation="MPRNPNLFRLAAKNIFLTYPHCDIPKDEAIEMLQNLPWSVVKPTY
FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN
FT YITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDVIRAGDPKTFIVSYHNV
FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES
FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD
FT WQSNCKYGKPVQIKGGVPTIVLCNPGEGSSCITFLEKEENKALKDWTLHNAKFISLNST
FT LYQA"
FT gene complement(2016. .2381)
FT /gene="AL4"
FT CDS complement(2016. .2381)
FT /codon_start=1
FT /note="AC4"
FT /gene="AL4"
FT /product="AL4"
FT /protein_id="ABC74539.1"
FT /translation="MKLLKCFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT
FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTRCLGVQNQTKTT
FT FTTTPSMQLVLERLSTL"
XX
SQ Sequence 2594 BP; 640 A; 563 C; 630 G; 761 T; 0 other;
dq347947 Length: 2594 29-JAN-2006 Type: N Check: 616 ..
1 accggatggc cgcgattttt tttggacctg gcccactatc agaaattgcg
51 ttgggccttc ctggataaag ttaaccaatc agtacacgtt tgggtagtct
101 aattattact aacttggtca ccaagttgtt ttatggtcta taaatttgtc
151 gttatgtgtg tggtccaacc atgcaaatag tgataatgcc taagcgtgat
201 gccccatggc gcttaatggc gggtacccct aaggtgagtc ggtcctctaa
251 ccagtctccc cggactggta ctgggcctaa atttgataag gcccatgcct
301 gggtaaacag gcccatgtat aggaagccca ggatatatcg ggcttggaga
351 acgcccgatg ttccaagagg ctgtgaaggt ccatgtaagg tccagtccta
401 cgagcaacga cacgatatct cccacgtggg gaaagtcatg tgcatatccg
451 atgtcacacg tggtaatggt atcacccacc gtgttggtaa gcggttctgt
501 gttaagtctg tgtatatcct cggtaagata tggatggacg agaacatcaa
551 gctgaagaac cacacgaaca gtgtcatgtt ctggttagtg agggaccgta
601 gaccctatgg tacgcctatg gatttcggcc aggtgttcaa catgtttgac
651 aatgagccca gcactgccac ggtcaagaac gatctacgcg atcgttatca
701 ggtcatgcac aagttctatg gcaaggtgac aggtggacag tatgccagca
751 acgagcaggc tatagtcaag cggttctgga gggtcaacaa ccatgtggtc
801 tacaatcacc aagaggctgg caagtatgag aatcacacgg agaacgcgtt
851 gttattgtat atggcgtgta ctcatgcctc taaccctgtg tatgctaccc
901 ttaagatccg gatctatttt tatgattcgg tattaaatta ataaaatttg
951 aattttattg aatgattttc taatacatga tttacatacg atctgtctgt
1001 tgcgaagcga acagctctga taacattatt aatgcaaaca acacctaacc
1051 tatctaaata caataagact aaatatttaa atctacttaa gtaattcgtc
1101 ccagaaactt gaactgatgt cgtccagatt tggtagttga ggtacgcttt
1151 gtgtagactc agcgccttcc tgaggttgtg gttgaaccgt atttggatgt
1201 ggtatatcct ggtgttggtg taaattgggt cctctacact gattatcgtg
1251 aaataaaggg gatttggtac ctcccagata aaaacggaat tctctgcctg
1301 atccacagtg atgctctccc ctgtgcgtga atccatggtt ggcgcaatcg
1351 atgtgcaggt agaacgagca gccacagttt aggtctatcc tctttcgacg
1401 aatcctggac tttgcaattt tgtgcttagg cttgatagag ggtggagttg
1451 agggagatga attttgcatt gtggagtgtc caatctttta gtgctttgtt
1501 ttcctctttt tcgaggaaag ttatacagct ggacccttct cctggattgc
1551 agagcacgat tgtcggaact ccccctttaa tttgaactgg cttcccgtat
1601 ttgcaatttg attgccagtc cttttgggcc ccaatcagct ctttccaatg
1651 cttcatcttt aaatattgcg gagtgatgtc atcaatgacg ttatattccg
1701 cttcatttga gtaaacccta gaattgaaat ctaggtgtcc actcaaataa
1751 ttgtgtgggc ctaaggcacg cgcccacatt gtctttcccg tcctcgattc
1801 accctcgatg attatactta taggtctctc cggccgcgca gcggcatccc
1851 taccaaaata atcatctgcc cattcttgca tctcgtccgg aacgttcgtg
1901 aacgacgaga gtggaaacgg aggaacccat ggttccggag ccttctgaaa
1951 gagccgctcg atgttagctt tgacgttatg gtagcttaca atgaacgtct
2001 tgggatctcc ggcccttata acgtcgagag cctctccagc actagctgca
2051 ttgacggcgt tgtggtaaac gtcgtctttg tttgattttg tacccccaga
2101 caccttgtat tgtccggatt cacaataatc accttctttg gtgatgtaat
2151 tctggacggc gttggtgtct ttggctgcct gtgcgtttgg atgaaaattg
2201 gcagaccttc tggggtgagt gaggtcgaaa aatctagcat ccttgatgtt
2251 ggacttcccg gagagttgga tgagacagtg gaggtgcgga aatccatctg
2301 cgtgttcctc tctggcgact cgtatgtacg ttggtttgac gactgaccat
2351 ggcagatttt gaagcatttc aatagcttca tctttgggga tatcacaatg
2401 tggatatgtt aagaaaatat ttttggcagc tagacgaaat aaattagggt
2451 tccgtggcat ttttgtaaat atgagccagg acaccagggg gagctctctc
2501 taaaactcta tgttgctggt gtcctggtgt cccatttata ctaaaaccct
2551 ctggggggac accaagggca aattcggcca tccgcaataa tatt