Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 2 isolate cscRNA2.81, complete genome.

ACC No: DQ357621

Dated: 2006-07-21 | Length: 377 | CRC: 1381466065

                
ID   DQ357621; SV 1; circular; genomic RNA; STD; VRL; 377 BP.
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AC   DQ357621;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 2 isolate cscRNA2.81, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 2
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-377
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-377
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .377
FT                   /organism="Cherry small circular viroid-like RNA 2"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA2.81"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368621"
FT   gene            join(372. .377,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(377,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(216. .266)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(260. .261)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 377 BP; 109 A; 79 C; 93 G; 96 T; 0 other;

dq357621 Length: 377  21-JUL-2006  Type: N  Check: 7132  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acggtattag
      51  tctcagttcc tagctgacgg tttgagccaa tcacggtaaa caaaaccttg
     101  ctttcctgtc ttccttgtat gacagaaggg ttatcattaa gataaccgca
     151  ggcgcaggtc ctgaaatcgt gatgaggcat aaaaccataa gcgaggaaag
     201  ggggagagac taacaactat ttcgttcttt tgaactcgtc agtagggaca
     251  cacatcccca tatagcggtt tcttcatact tcagggcctg cgcctgatgg
     301  ttactcacaa taagtaacgt tccgtcttaa ggaagacggg aagcaaaggt
     351  tttgttggta tgagaaacct aactgta