Sequence of DPV Sesame necrotic mosaic virus
Sesame necrotic mosaic virus replicase and truncated replicase genes, partial cds; coat protein gene, complete cds; and protein 4 (p4) and protein 5 (p5) genes, partial cds.
ACC No: DQ367845
Dated: 2006-02-19 | Length: 3368 | CRC: 1376604988
ID DQ367845 standard; genomic RNA; VRL; 3368 BP.
XX
AC DQ367845;
XX
SV DQ367845.1
XX
DT 19-FEB-2006 (Rel. 86, Created)
DT 19-FEB-2006 (Rel. 86, Last updated, Version 1)
XX
DE Sesame necrotic mosaic virus replicase and truncated replicase genes,
DE partial cds; coat protein gene, complete cds; and protein 4 (p4) and
DE protein 5 (p5) genes, partial cds.
XX
KW .
XX
OS Sesame necrotic mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Aureusvirus; unclassified Aureusvirus.
XX
RN [1]
RP 1-3368
RA Yan L., Chen K., Han C.;
RT "Partial Sequence analysis of Sesame Necrotic Mosaic Virus";
RL Zhongguo You Liao Zuo Wu Xue Bao 24:61-66(2002).
XX
RN [2]
RP 1-3368
RA Yan L., Xu Z., Chen K.;
RT ;
RL Submitted (16-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Oil Crops Research Insitute, CAAS, No 2, Xudong 2nd Road, Wuchang, Wuhan,
RL Hubei 430062, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .3368
FT /country="China:Wuhan"
FT /db_xref="taxon:369917"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Sesame necrotic mosaic virus"
FT /serotype="Wuhan"
FT /isolate="Wuhan"
FT /specific_host="Sesame"
FT /lab_host="Nicotiana benthamiana"
FT /PCR_primers="fwd_seq: aggagatggtggtccgaact, rev_seq:
FT ctgtgtgccctccactacaa"
FT CDS <1. .1599
FT /codon_start=1
FT /note="amber stop codon readthrough"
FT /transl_except=(pos:49. .51,aa:OTHER)
FT /product="replicase"
FT /protein_id="ABD34316.1"
FT /translation="PLEAVKASYTGGFESKXGCLLRHRGFNTKVNSCLPDNVLSSREEM
FT VVRTGTPVRNERTWYSFSGYASTYEYIVHNSSLVNVVRGLVERVFCVVRDGQLQRPLRP
FT ALGVYEKKLGNIGRKISRIVGYCPAMTRQQFVDSYSGLRRATYEKARLSLDVLPCTRKD
FT ACLKTFVKAEKINITLKPDPAPRVIQPRDPRYNVEVGRYLKNLEPRLMKAIDKLWGEKT
FT AIKGYTVEQVGDILHRKSLGFRDPAFVGLDASRFDQHCSRQALEWEHSVYNAIFRDPYL
FT AELLTWQIDNVGRAYLKDGMVKYRVDGCRMSGDMNTSMGNYLIMSCLVYAYCQEIGIHA
FT SLANCGDDCVLFLERGDLNKLKSLPDWFAKMGYAMKVEKPVYAVEHIEFCQQHPVLLSR
FT GWVMVRRPDVCLTKDVCIVRGGMTPERLQRWLYAQHDGGLSLAGDCPVLGAFYSQFPAG
FT DRAGEQSEYDDAHKFKAGKQCGAITPTARYSFWMAFGLTPDEQIAIERDLKGWNPRVEE
FT GEGHVVPTLLDHCSR"
FT CDS <1. .51
FT /codon_start=1
FT /product="truncated replicase"
FT /protein_id="ABD34317.1"
FT /translation="PLEAVKASYTGGFESK"
FT CDS 1660. .2793
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ABD34313.1"
FT /translation="MALAAANTGKMLASGGRIADGTIRIIDGIRCVYNAASKMWRATKK
FT QGNGATVGHPGALPGAVAAPIAISRQIRGSKPKFRSTKGVVTITHREFLSTVQAVNTGF
FT LRLNNGVSPGYYRINPSNSAVTPWLVNIAANFDMYRFRNVSLRYIPMCATTEVGRVGLF
FT WDKDSQDVGPFDRAELANYAHVAETSVWAEAVLNVPCDGQKRFCNDSAVADPKLTELGR
FT IGFVTYGTNTSNFIGDVFIEYTVELHEPQPSSNLVAELLGTGGTFSAARGSNVIEWRSD
FT TSSASVVSITFKPGTYLVQCVFDGTTVTGASVTAVGGGAVLNSKVVFSTTEGSISATVD
FT MSEPNNRLDFGVTAAVLSGWNVFATRITRELALTINS"
FT gene 2883. .>3368
FT /gene="p4"
FT CDS 2883. .>3368
FT /codon_start=1
FT /gene="p4"
FT /product="protein 4"
FT /protein_id="ABD34314.1"
FT /translation="MEIVSLDGTFDESISVQNEVKKIVLSHSTTKAILPIAPKSSLSKW
FT RIPKSGFYTPIDVRFVLTPHISERANVMAVVKLVDARDCSPSRILYQTKEFNLGAGIVV
FT EGTQLPFCLPVGEYPLQFEVTVSRSQFRETSKLFTTSNEWRMMCSTTPLSRVRSVMGA"
FT gene 3014. .>3368
FT /gene="p5"
FT CDS 3014. .>3368
FT /codon_start=1
FT /gene="p5"
FT /product="protein 5"
FT /protein_id="ABD34315.1"
FT /translation="MENPEEWVLYPDRCPFCSHATYIRTSQCDGGGKVSGRTRLFAEPY
FT LVSDKGVQPWSWDCSGGHTVTLLPSGGGISFTVRSHGVAVSIQGDVQAIHNLQRMANDV
FT LNHPIIQGKVCYGG"
XX
SQ Sequence 3368 BP; 794 A; 769 C; 924 G; 881 T; 0 other;
dq367845 Length: 3368 19-FEB-2006 Type: N Check: 9629 ..
1 ccccttgaag ccgtcaaagc ctcctacaca gggggctttg aaagcaaata
51 ggggtgcctt cttcgtcacc gcgggttcaa cacaaaggtc aattcatgct
101 tacctgacaa tgtgttgtcc agccgcgagg agatggtggt ccgaactggg
151 acccctgtgc gtaatgagcg gacatggtac tcattttctg gatacgccag
201 cacttacgag tacattgtgc ataattcctc tctcgttaat gttgttcgtg
251 gattggtcga gagagtgttt tgcgtcgtga gagacggcca acttcaacgt
301 cctttacgcc cggcacttgg cgtgtatgag aagaagttgg gtaatattgg
351 tcgtaaaatc agccggatcg ttgggtactg ccccgctatg actcgacagc
401 agtttgtcga ctcatatagc ggcttgcgac gtgccacgta cgaaaaggcg
451 cggttgtcct tggatgttct cccctgcact aggaaagatg cttgcctcaa
501 aacttttgtg aaagcggaga agatcaatat tacattaaaa cccgatccag
551 ccccgagagt tattcagcca cgtgaccctc ggtataatgt tgaagtggga
601 cgatacttga agaatcttga accccggctt atgaaggcta ttgataaact
651 ttggggggaa aagacagcaa ttaaggggta cactgttgag caagttggtg
701 acattctgca ccgtaaaagc ctcgggttcc gtgatccagc tttcgttggt
751 cttgacgcta gccgttttga tcagcactgt tcacggcaag cccttgaatg
801 ggagcacagc gtttataatg cgatctttcg ggatccctat ttggctgagc
851 tccttacgtg gcagattgac aatgttggcc gtgcatacct caaggatgga
901 atggtcaagt atcgagttga cgggtgtcgg atgtctggag acatgaacac
951 ttcaatgggc aactacctga ttatgtcgtg tcttgtctat gcgtactgcc
1001 aggagatcgg tatccatgcc agtctagcta attgcggcga tgactgcgta
1051 ctctttctcg agcgtgggga tctgaacaag ttgaagtccc tgcctgactg
1101 gtttgctaag atggggtatg ctatgaaggt tgagaagcct gtgtatgcag
1151 ttgagcatat tgaattttgc cagcagcatc cagttttgtt atccagaggg
1201 tgggttatgg tcagaaggcc ggatgtttgt cttactaagg atgtgtgcat
1251 cgtacggggt ggtatgacac cggagcgact ccagcggtgg ctgtatgccc
1301 agcatgatgg cgggttatcc cttgcgggag actgtccagt gcttggtgct
1351 ttttacagcc agtttcctgc tggtgatcgg gccggggaac aatcagagta
1401 cgacgatgcc cataagttca aggccggtaa gcagtgtggt gctatcacgc
1451 cgaccgcaag gtactcgttt tggatggctt tcgggctcac acccgatgag
1501 cagattgcaa ttgaacggga cctcaaaggt tggaatcctc gcgttgagga
1551 aggggaggga catgtggttc ctaccctcct tgaccactgc tcaagataac
1601 tgaccattat cacctccatt tacctaacga tgactatgat cttaaagaac
1651 aagcctatga tggctttagc agcagcaaat actggaaaga tgttagcgag
1701 tggtggccgg attgctgatg gcaccatccg cattattgac ggaatacgtt
1751 gtgtttacaa tgcagcttca aagatgtggc gggcgacaaa gaagcaaggc
1801 aacggtgcca ctgttggcca tcctggggct ctcccggggg ctgttgcagc
1851 accgattgcc atttctcgcc aaatacgagg tagcaaacct aagtttcgca
1901 gtaccaaagg agttgtgacc atcactcacc gagagttcct cagcacggtc
1951 caggccgtga atacaggttt tcttcgcctg aataacgggg tatcgccagg
2001 ctactaccga attaatcctt ccaattcagc agttacacca tggcttgtca
2051 acattgccgc caatttcgac atgtatcgct tccgtaatgt ctcgcttcgg
2101 tatatcccaa tgtgtgcgac gacagaggtt ggccgtgtcg ggttgttctg
2151 ggacaaggat tcccaagatg taggcccgtt tgacagagca gagttggcta
2201 actatgcgca tgtggctgag acatcggtat gggctgaggc cgttttgaat
2251 gtaccctgtg acgggcagaa aaggttttgt aatgattcag ccgttgccga
2301 ccctaagctg actgaactcg ggcgtattgg atttgtcaca tatgggacta
2351 acaccagcaa tttcattggt gatgtgttta tcgagtatac tgtggaactt
2401 catgagccgc aaccttcctc aaacctagtt gctgagcttc tggggactgg
2451 gggcactttc tctgcagcaa gaggttcaaa cgtcatcgag tggcggagtg
2501 acacgagctc cgcctcagtt gtgtcaatta cgtttaaacc aggcacttat
2551 cttgttcagt gtgtatttga tgggactact gtgactggag catcagtcac
2601 tgctgtcggc ggtggggctg tccttaactc caaggtagtg ttttctacta
2651 ctgaggggtc catctctgcc accgttgaca tgtctgagcc taacaaccgt
2701 cttgactttg gggtcacagc agccgtattg tccggatgga atgtatttgc
2751 tacccgtatt acacgggagc tagcgttaac gattaattct taaggcatag
2801 tcgtgtgcga aagggaggtt ggattgaggg tggggcccag gccccactgc
2851 acttgagtgg ctcaagaaga ctgaccatct tcatggaaat tgtatctttg
2901 gacggaacat ttgacgaatc tataagtgta caaaacgaag tgaagaaaat
2951 agtgctttct cacagcacta caaaagccat actcccgata gcaccgaaga
3001 gtagtttgag taaatggaga atcccgaaga gtgggtttta taccccgatc
3051 gatgtccgtt ttgttctcac gccacatata tccgaacgag ccaatgtgat
3101 ggcggtggta aagttagtgg acgcacgcga ctgttcgccg agccgtatct
3151 tgtatcagac aaaggagttc aaccttggag ctgggattgt agtggagggc
3201 acacagttac ccttctgcct tccggtgggg gaatatcctt tacagttcga
3251 agtcacggtg tcgcggtctc aattcaggga gacgtccaag ctattcacaa
3301 cctccaacga atggcgaatg atgtgctcaa ccaccccatt atccagggta
3351 aggtctgtta tgggggct