Sequence of DPV Sugarcane streak mosaic virus

Sugarcane streak mosaic virus isolate CB671-1 coat protein mRNA, partial cds.

ACC No: DQ421788

Dated: 2009-01-07 | Length: 855 | CRC: 852428340

                
ID   DQ421788; SV 2; linear; mRNA; STD; VRL; 855 BP.
XX
AC   DQ421788;
XX
DT   25-APR-2006 (Rel. 87, Created)
DT   07-JAN-2009 (Rel. 98, Last updated, Version 3)
XX
DE   Sugarcane streak mosaic virus isolate CB671-1 coat protein mRNA, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae.
XX
RN   [1]
RP   1-855
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   "Sugarcane streak mosaic virus CB671-1 isolate from mixed infection coat
RT   protein gene";
RL   Unpublished.
XX
RN   [2]
RP   1-855
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   ;
RL   Submitted (01-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Sugarcane Breeding Institute, Sugarcane Road, Coimbatore,
RL   Tamil Nadu 641007, India
XX
RN   [3]
RC   Sequence update by submitter
RP   1-855
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   ;
RL   Submitted (10-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Sugarcane Breeding Institute, Sugarcane Road, Coimbatore,
RL   Tamil Nadu 641007, India
XX
CC   On Jan 5, 2009 this sequence version replaced gi:93009161.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .855
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum sp. hybrid"
FT                   /strain="CoC 671"
FT                   /isolate="CB671-1"
FT                   /serotype="CBE(Tamil Nadu)"
FT                   /mol_type="mRNA"
FT                   /country="India"
FT                   /isolation_source="mixed infection"
FT                   /PCR_primers="fwd_seq: ttggatccggacaaggaacgcagccacctc,
FT                   rev_seq: tataaagctttcagtgctgagcacgcccaactg"
FT                   /db_xref="taxon:53954"
FT   CDS             <1. .851
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /protein_id="ACL14909.1"
FT                   /translation="TGTQPPQNQSSSPATTSSISSTTTSQVESQTTGNLTNTVSQTMKS
FT                   LYVPPLVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTD
FT                   EILPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQVEFEMGPMYRN
FT                   AKPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNIPS
FT                   PAEIDVRNQVINARTPRMGKPLFRHALRAGGDEDTDLRREDDANYGRTQIGGAQFGRAQ
FT                   H"
XX
SQ   Sequence 855 BP; 265 A; 198 C; 222 G; 170 T; 0 other;

dq421788 Length: 855  07-JAN-2009  Type: N  Check: 2968  ..

       1  ggacaggaac gcagccacct cagaatcaga gtagttcacc agcgacaaca
      51  tcaagcatat catctaccac aacaagtcaa gtagagagtc aaacgacggg
     101  gaacttaacc aacacggttt cacaaacgat gaagtctcta tacgtaccac
     151  cactggttaa gtcactcaaa acagaggcca aggcaaagca gatgatgagg
     201  tacacaccac cacaggcact tatatcttca tcggccgcat cgatacggca
     251  gttcaatgat tgggcaaaca cagcggctga agggtatgga aagacaattc
     301  aacagttcac ggatgagata ctccctttct ggatctactg gtgtgttgtc
     351  aacggtgcaa ctgaagagaa taagacaaag ccaaagtgga cgaaagctgt
     401  gttgaatcta gacggagcag atggcacaga gattaccgtg gatgaaaacg
     451  gaccccaagt ggagtttgaa atggggccga tgtacagaaa cgccaaacct
     501  ggtattcgcg caatcatgag acattttggc gaattggcgt acaagtgggt
     551  tcagttctcg gttcgtagcg ggaaacccat aataccacac aatgcagtga
     601  aggcaggatt gaccacacca gagttttatc cttgctgcat tgatttcgtg
     651  atggtgaaca tcccctcacc agcagaaatc gacgtgcgta accaggtaat
     701  taacgcacgc acaccccgga tgggaaagcc tttattccgt catgctctta
     751  gagccggggg agatgaggac acggacctgc gtagggaaga tgatgcaaat
     801  tatggaagaa cgcagatcgg tggcgctcag tttgggcgtg ctcagcactg
     851  aaagc