Sequence of DPV Cotton leaf curl Multan virus

Cotton leaf curl virus isolate Sriganganagar-2 pre-coat protein, coat protein, replication enhancer protein, and transcription activator protein genes, complete cds.

ACC No: DQ456836

Dated: 2006-04-23 | Length: 1910 | CRC: -299149190

                
ID   DQ456836   standard; genomic DNA; VRL; 1910 BP.
XX
AC   DQ456836;
XX
SV   DQ456836.1
XX
DT   23-APR-2006 (Rel. 87, Created)
DT   23-APR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Cotton leaf curl virus isolate Sriganganagar-2 pre-coat protein, coat
DE   protein, replication enhancer protein, and transcription activator protein
DE   genes, complete cds.
XX
KW   .
XX
OS   Cotton leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-1910
RA   Padmalatha K.V., Malathi V.G.;
RT   "Nucleotide sequences of Cotton leaf curl virus isolated from
RT   Sriganganagar, Rajasthan, India";
RL   Unpublished.
XX
RN   [2]
RP   1-1910
RA   Padmalatha K.V., Malathi V.G.;
RT   ;
RL   Submitted (18-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL   Pusa Road, New Delhi 110 012, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1910
FT                   /organism="Cotton leaf curl virus"
FT                   /segment="A"
FT                   /isolate="Sriganganagar-2"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Sriganganagar, Rajasthan"
FT                   /note="acronym: CLCuV"
FT                   /db_xref="taxon:53010"
FT   CDS             131. .487
FT                   /codon_start=1
FT                   /product="pre-coat protein"
FT                   /note="AV2"
FT                   /protein_id="ABE77183.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSEDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQDVQDVQKSRCS"
FT   CDS             291. .1061
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="AV1"
FT                   /protein_id="ABE77182.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQRAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDIPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFARVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(1027. .1467)
FT                   /codon_start=1
FT                   /product="replication enhancer protein"
FT                   /note="AC3"
FT                   /protein_id="ABE77185.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT                   LTIRIQFNYNTRKALGLHKCSLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIKFKLYNINSLQSHKNIS"
FT   CDS             complement(1160. .1612)
FT                   /codon_start=1
FT                   /product="transcription activator protein"
FT                   /note="AC2"
FT                   /protein_id="ABE77184.1"
FT                   /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH
FT                   SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN"
XX
SQ   Sequence 1910 BP; 514 A; 373 C; 440 G; 583 T; 0 other;

dq456836 Length: 1910  23-APR-2006  Type: N  Check: 7245  ..

       1  accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg
      51  gccaatcata tgactccctc aaagctaaat aacgctcccg cacactataa
     101  gtacttgcgc actaagtttc aaattcaaac atgtgggatc cactattaaa
     151  cgaattccct gatacggttc acgggtttcg gtgtatgctt tctgtgaaat
     201  atttgcaact tttgtcggag gattattcac cggatacgct tgggtacgag
     251  ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc
     301  gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt
     351  ctgaacttcg gcagcccata caccagccgt gctgctgccc ccattgtccg
     401  cgtcacaaaa caacgggcat ggacaaacag gcctatgaac aggaagccca
     451  ggatgtacag gatgtacaga agtccagatg ttcctagagg atgtgaaggt
     501  ccatgtaagg ttcagtcgtt tgagtccaga catgatattc agcatatagg
     551  taaagtaatg tgtgttagtg atgttactcg tggtactggg ctgacccata
     601  gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata
     651  tggatggatg agaacattaa gacgaagaat cacacgaata gtgtgatgtt
     701  tttcttggtt agagatcgta gacctgttga tatacctcaa gattttggag
     751  aggtatttaa tatgtttgat aatgagccca gtacggcgac tgtgaagaat
     801  gttcatcgtg ataggtatca agttctgcgc aaatggtatg caactgtcac
     851  cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgcca
     901  gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag
     951  aatcatacgg aaaatgcgtt aatgctttat atggcttgta ctcacgctag
    1001  caaccctgtt tatgctacgt tgaagattag gatatatttt tatgactctg
    1051  taacgaattg atattataaa gtttgaattt tatttctgaa tattgatcta
    1101  catacatagt ttgttggatt acattataca atacatgttc tacagcttta
    1151  ataactaaat taattgaaat tacaccgaga ttgttcagat atttgaggac
    1201  ttgggttttg aataccctta agaaaagacc agtctgaggc tgtaaggtcg
    1251  tccagattcg gaatgttaga gaacacttgt gcagtcccag agctttccga
    1301  gtgttgtagt tgaactggat cctgatcgtg agtatgtcca tattcgtcgt
    1351  gaatggacgg ttgacgtggc tgatgatctt gaaataaagg ggatttggaa
    1401  cctcccagat atatgcgcca ttccctgctt gagctgcagt gatgggttcc
    1451  cctgtgcgtg aatccatggt tgtggcagtt gattgacaga taataagaac
    1501  acccgcattc aagatctact ctcctcctcc tgttgcgcct cttcgcttcc
    1551  ctgtgctgta ctttgattgg tacctgagta catgggtcta tcaagtgtga
    1601  tgaagatcgc attctttaaa gcccaatttt ttagtgcaga attcttctct
    1651  tcatccaaaa actctttata gcttgaattg ggccctggat tgcagaggaa
    1701  gatagtggga attccgcctt taatttgaac tggcttcccg tattttgtat
    1751  ttgattgcca gtccttttgg gcccccatga actccttaag gtgctttagg
    1801  taatgcgggt cgacgtcatc aatgacgtta aaccaggcgt cattactgta
    1851  tacccttgga ctcagatgaa attcaaacca aaaggctaaa gcggccatcc
    1901  gtttaatatt