Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Zulia-Santa Barbara coat protein (CP) gene, partial cds.

ACC No: DQ500117

Dated: 2008-03-06 | Length: 858 | CRC: -1629181171

                
ID   DQ500117; SV 2; linear; genomic RNA; STD; VRL; 858 BP.
XX
AC   DQ500117;
XX
DT   20-JUN-2006 (Rel. 88, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 3)
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DE   Papaya ringspot virus isolate Zulia-Santa Barbara coat protein (CP) gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RX   DOI; 10.1007/s00705-007-1091-1
RX   PUBMED; 18030545.
RA   Fernandez-Rodriguez T., Rubio L., Carballo O., Marys E.;
RT   "Genetic variation of papaya ringspot virus in Venezuela";
RL   Arch. Virol. 153(2):343-349(2008).
XX
RN   [2]
RP   1-858
RA   Fernandez T., Rubio L., Marys E.;
RT   ;
RL   Submitted (12-APR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Microbiologia, IVIC, Carretera Panamericana Km. 11, Caracas 21827,
RL   Venezuela
XX
RN   [3]
RC   Sequence update by submitter
RP   1-858
RA   Fernandez T., Rubio L., Marys E.;
RT   ;
RL   Submitted (21-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Microbiologia, IVIC, Carretera Panamericana Km. 11, Caracas 21827,
RL   Venezuela
XX
CC   On Jun 21, 2007 this sequence version replaced gi:108796155.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya L"
FT                   /isolate="Zulia-Santa Barbara"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .>858
FT                   /gene="CP"
FT   CDS             <1. .>858
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A6M9J3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:A6M9J3"
FT                   /protein_id="ABR23533.1"
FT                   /translation="SEAVDAGLNEKLKEKDKQKEKEKEKQKDKEKDNASDGNDVSTSTR
FT                   TGERDRDVNVGTSGIFTVPRIKSFTDKMTLPRIKGKTVLNLNHLLQYNPQQIDISNTRA
FT                   TQLQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGEIQVEYP
FT                   IKPLIEHATPSFRQIMAHFSNAAEAYIAKRNAVERYMPRYGLKRNLTDISLARYAFDFY
FT                   EVNSKTPDRAREAHMQMKAAALRNASRRLFGMDGSVGNKEENTERHTVEDVNRDMHSLL
FT                   GMRNR"
XX
SQ   Sequence 858 BP; 292 A; 140 C; 217 G; 209 T; 0 other;

dq500117 Length: 858  06-MAR-2008  Type: N  Check: 1914  ..

       1  agtgaagctg tggatgctgg tttgaatgaa aagctcaaag aaaaagacaa
      51  acagaaagaa aaagaaaaag aaaaacaaaa agataaagaa aaagacaatg
     101  ctagtgacgg aaatgatgtg tcaactagca caagaactgg agagagagat
     151  agagatgtca atgttgggac tagtggaatt ttcactgttc cgagaataaa
     201  atcatttact gataagatga ctctaccgag gattaaagga aagactgtcc
     251  tcaatttaaa tcatcttctt cagtataatc cgcaacaaat tgacatttct
     301  aacactcgtg ccactcaact acaatttgag aagtggtatg agggagtgcg
     351  gaatgattat ggccttaatg acaatgaaat gcaagtgatg ctgaatggct
     401  tgatggtttg gtgtatcgag aatggtacgt ctccagacat atctggtgtc
     451  tgggttatga tggatgggga aatccaagtt gaatatccaa tcaagccttt
     501  aattgagcat gctactccgt catttaggca aattatggct cactttagca
     551  atgcggcaga agcatacatt gcaaagagga atgctgttga gaggtacatg
     601  ccgcggtatg ggctcaagag aaatttgact gacattagcc tcgctagata
     651  cgcttttgat ttctatgagg tgaattcgaa gacacctgat agggctcgag
     701  aagctcacat gcagatgaaa gctgcagcgc tgcgaaacgc tagtcgaaga
     751  ttgtttggta tggacggcag tgttggtaac aaggaagaaa acacggagag
     801  acacacagtg gaagatgtca atagagacat gcactctctc ctgggtatgc
     851  gtaatcgg