Sequence of DPV Tomato leaf curl Karnataka virus
Tomato leaf curl New Delhi virus isolate ToLCND-CTM segment DNA A, complete sequence.
ACC No: DQ629102
Dated: 2006-05-31 | Length: 2751 | CRC: -70242793
ID DQ629102 standard; genomic DNA; VRL; 2751 BP.
XX
AC DQ629102;
XX
SV DQ629102.1
XX
DT 31-MAY-2006 (Rel. 87, Created)
DT 31-MAY-2006 (Rel. 87, Last updated, Version 1)
XX
DE Tomato leaf curl New Delhi virus isolate ToLCND-CTM segment DNA A, complete
DE sequence.
XX
KW .
XX
OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2751
RA Pandey P., Mukherjee S.K.;
RT "Nucleotide sequence of Tomato leaf curl virus DNA A isolate ToLCND-CTM";
RL Unpublished.
XX
RN [2]
RP 1-2751
RA Pandey P., Mukherjee S.K.;
RT ;
RL Submitted (11-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi
RL 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2751
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="DNA A"
FT /specific_host="cherry tomato"
FT /isolate="ToLCND-CTM"
FT /mol_type="genomic DNA"
FT /country="India"
FT /note="mild phenotype"
FT /db_xref="taxon:223347"
FT gene 145. .501
FT /gene="AV2"
FT CDS 145. .501
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /note="pre-coat protein"
FT /protein_id="ABF71080.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQVHEQ
FT KAQDVQDVQKSRCP"
FT gene 305. .1075
FT /gene="AV1"
FT CDS 305. .1075
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1"
FT /note="coat protein"
FT /protein_id="ABF71081.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRSMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSFYFVGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYVACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1072. .1476)
FT /gene="AC3"
FT CDS complement(1072. .1476)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3"
FT /protein_id="ABF71082.1"
FT /translation="MDSRTGEPITAAQAGNGVFIWEIQNPVYFKITEHHNRPFLMKEDI
FT ITVQIQFNHNLRKVLGIHKCFLAYRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINN
FT VIRAVDHVLWNILHHVVYVDQTYSIKFIIY"
FT gene complement(1217. .1621)
FT /gene="AC2"
FT CDS complement(1217. .1621)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /protein_id="ABF71083.1"
FT /translation="MRPSSPSKAHFTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA
FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSRVFQDNRTPQQAIPNEGRHHHRSDTVQSQP
FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI"
FT gene complement(1524. .2609)
FT /gene="AC1"
FT CDS complement(1524. .2609)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1"
FT /protein_id="ABF71084.1"
FT /translation="MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR
FT VSQEKHQDGSLHIHALIQFKGKSQVQKPQTFRCHSPKYLHPIPPKLPGSKVQLRCQVYV
FT EKDGDYIDWGQFQIDGRSARGGQQTTNDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKCNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAADNVVSAAARPIRPISIVIEGD
FT SRTGKTMRARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL
FT YSGSNQSAAQDSQEGDQASTS"
FT gene complement(2195. .2452)
FT /gene="AC4"
FT CDS complement(2195. .2452)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="ABF71085.1"
FT /translation="MGLCISMPSSNSKVNPRFRNPRHFDVTHPNTSTPFHPNFQGAKSS
FT SDVKSTSRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRR"
XX
SQ Sequence 2751 BP; 728 A; 548 C; 636 G; 839 T; 0 other;
dq629102 Length: 2751 31-MAY-2006 Type: N Check: 4488 ..
1 accggatggc cgcgattttt ttttgtgggc ccctcaacgc actaactgac
51 aaagacatga ggaccaatca catgatgcgc tcaaagctta attgttatgt
101 ggtcccctat ttaaacttcg ttaccaagta ttgtacatcg cactatgtgg
151 gatccattgt taaacgagtt tcccgaaacc gttcacggtt ttagatgtat
201 gttagcagtt aaatatttgc agttagtaga aaagacctat tctcctgata
251 cattaggtta cgatttaatt agggatttaa ttttagttat tagggctaga
301 aattatgtcg aagcgaccag cagatataat catttccacg cccgcttcga
351 aggtacgccg ccgtctcaac ttcgacagcc catatgtgag ccgtgctgct
401 gcccccattg tccgcgtcac caaagcaaaa gcatgggcga acaggtccat
451 gaacagaaag cccaggatgt acaggatgta cagaagtcca gatgtcccta
501 gaggttgtga aggcccatgt aaggtccagt cgtttgagtc cagacatgat
551 gtagtccata tagggaaggt catgtgtatt agtgatgtca ctcgtggaac
601 tgggttgacc catcgagtgg gtaagcgttt ttgcgttaag tctttttatt
651 ttgtggggaa gatctggatg gatgagaaca tcaagaccaa gaatcacacg
701 aacagtgtca tgttttttct tgttcgtgac cgtcgtcctg ttgacaagcc
751 acaagacttt ggagaggtgt tcaatatgtt tgacaacgag cctagcactg
801 ctactgttaa gaatatgcac agagatcgtt atcaggtgtt gaggaagtgg
851 catgcaactg tcaccggtgg acagtacgct tcaaaggaac aagctctcgt
901 gaagaagttt attagagtta ataattatgt tgtttataac cagcaagaag
951 ctggcaagta tgagaatcat tctgagaatg cgttaatgtt gtatgtggcg
1001 tgtactcacg cctctaaccc tgtgtatgct actttgaaga tacggatcta
1051 tttttatgat tcagtatcga attaataaat aatgaatttt attgaatatg
1101 tttggtctac atatacaacg tggtgtaata tattccataa tacatgatca
1151 acggctctaa ttacattgtt aatactgata actcctaagt tatttaaata
1201 cttaagcact tgggtcttaa atacccttaa gaaacgacca gtcggaggct
1251 gtgaggtcat ccagattcgg taggctagga aacatttgtg tatccccaac
1301 actttcctca ggttgtgatt gaactgtatc tgaacggtga tgatgtcttc
1351 cttcattagg aatggcctgt tgtggtgttc tgttatcttg aaatacacgg
1401 gattttgaat ctcccagata aacacgccat tccctgcttg agctgcagtg
1451 atgggttccc ctgtgcgtga atccatggtc gtggcaggct atggatatga
1501 agtatgaaca cccacacggt agatcaactc gtcgacgcct gatccccttc
1551 ttggctatct tgtgctgcac tttgattgga acctgagtaa agtgggcctt
1601 cgagggtgat gaaggtcgca ttctttaaag cccaattctt gagtgcagca
1651 tttttctctt catccaagaa ttctttatag cttgagttgg gtcctggatt
1701 gcagaggaag atagttggaa ttccaccttt aatttgaact ggctttccgt
1751 actttgtatt tgattgccag tccctttggg cccccatgaa ctccttaaag
1801 tgctttaggt agtgggggtc tacgtcatca atgacgttat accaggcatc
1851 attattgtag acctttgggc taaggtctag atgaccacac aaatagttat
1901 gtggacccag tgatctggcc cgcatcgtct tcccagttct actgtcaccc
1951 tcaatcacta tacttatggg ccttataggc cgcgcagcgg cactaacgac
2001 gttgtcggca gcccactcct caagttcttc tggaacttga tcaaatgaag
2051 aagaagaaaa aggagaaaca taaacctcca ttggaggtgt aaaaatccta
2101 tctaaattac attttaaatt atggtattga aaaataaaat ctttagggag
2151 tttttcccta attattgcta aagctgcttc cgctgaacct gcatttagcg
2201 cctctgctgc agcatcatta gttgtctgtt gacctcctcg agcagatcgt
2251 ccatcgatct gaaactgacc ccagtcgatg taatcaccgt ccttctcgac
2301 gtagacttga catctgagct ggactttgct ccctggaagt ttgggtggaa
2351 tggggtggag gtatttgggt gagtgacatc gaaatgtctg gggtttctga
2401 acctgggatt tacctttgaa ttggatgagg gcatggatat gcagagaccc
2451 atcttggtgt ttttcctgtg acactctgat aaataattta tcagacgggc
2501 aagaaatatt tttaaggagt tcgagcattt gctctttggg tattgggcat
2551 tttggataag taaggaagat gttttttgct ttaacttgga actgatgtgt
2601 ccgaggcata atgaattggg tgctctctaa aatctgagga atggggatct
2651 ttgggtgcct atttatattg agctcccaaa tggcattatt gtaatttggg
2701 gaaataattc aaaatcctca cgctccaaaa agcggccatc cgtataatat
2751 t