Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate Yolo_274_PAV coat protein gene, complete cds.

ACC No: DQ631850

Dated: 2008-06-06 | Length: 800 | CRC: 1148794476

                
ID   DQ631850; SV 1; linear; genomic RNA; STD; VRL; 800 BP.
XX
AC   DQ631850;
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DT   29-MAY-2008 (Rel. 95, Created)
DT   06-JUN-2008 (Rel. 96, Last updated, Version 2)
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DE   Barley yellow dwarf virus-PAV isolate Yolo_274_PAV coat protein gene,
DE   complete cds.
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KW   .
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OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
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RN   [1]
RP   1-800
RA   Newton L.A., Linton E.W., Malmstrom C.M.;
RT   "Secrets of the herbarium: Historic associations among RNA viruses and wild
RT   grass hosts";
RL   Unpublished.
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RN   [2]
RP   1-800
RA   Newton L.A., Linton E.W., Malmstrom C.M.;
RT   ;
RL   Submitted (12-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Biology, Michigan State University, 166 Plant Biology
RL   Laboratories, East Lansing, MI 48824, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .800
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /specific_host="Avena fatua"
FT                   /isolate="Yolo_274_PAV"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:California, natural grassland in Yolo County"
FT                   /isolation_source="wild host"
FT                   /collection_date="2002"
FT                   /note="acronym: BYDV"
FT                   /db_xref="taxon:12040"
FT   CDS             198. .800
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /protein_id="ABG24221.1"
FT                   /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
XX
SQ   Sequence 800 BP; 239 A; 202 C; 186 G; 173 T; 0 other;

dq631850 Length: 800  06-JUN-2008  Type: N  Check: 8879  ..

       1  atccagagtg tgaaggtgac gactccacat ctgcaatcaa tactgctttc
      51  cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct
     101  gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc
     151  gtactttatt tacaataaag tttcagacac cactagagag gtggtgaatg
     201  aattcagtag gccgtagagg acctagacgc gcaaatcaaa atggcccaag
     251  aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc caacccaatc
     301  gagcaggacc cagacgacga aatggtcgac gcaagggaag aggaggggca
     351  aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt
     401  tgacaacctt aaagccaact cctccggggc aatcaaattc ggccccagtc
     451  tatcgcaatg cccagcgctt tcagacggaa tactcaagtc ctaccatcgt
     501  tacaagatca caagtatccg agttgagttt aagtcacacg cgtccgccac
     551  tacggccggc gctatcttta ttgaactcga caccgcgtgc aagcaatcag
     601  ccctgggtag ctacattaat tccttcacca tcagcaagac cgcctccaag
     651  gtcttcaggt cagaggcaat taacgggaag gaattccagg aatcaacgat
     701  agaccaattc tggatgctct acaaggccaa tggaaccacc actgacacgg
     751  caggacaatt catcatcacg atgagtgtca gtttgatgac ggccaaatag