Sequence of DPV Sida yellow vein Vietnam virus
Sida yellow vein Vietnam virus segment DNA-A, complete sequence.
ACC No: DQ641696
Dated: 2007-12-21 | Length: 2753 | CRC: 443037450
ID DQ641696; SV 1; circular; genomic DNA; STD; VRL; 2753 BP.
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AC DQ641696;
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DT 03-MAY-2007 (Rel. 91, Created)
DT 21-DEC-2007 (Rel. 94, Last updated, Version 2)
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DE Sida yellow vein Vietnam virus segment DNA-A, complete sequence.
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KW .
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OS Sida yellow vein Vietnam virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2753
RX PUBMED; 18089756.
RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT "Molecular characterization of begomoviruses and DNA satellites from
RT Vietnam: additional evidence that the New World geminiviruses were present
RT in the Old World prior to continental separation";
RL J. Gen. Virol. 89(PT 1):312-326(2008).
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RN [2]
RP 1-2753
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (18-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Institute of Health and Biomedical Innovation, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .2753
FT /organism="Sida yellow vein Vietnam virus"
FT /segment="DNA-A"
FT /specific_host="Arrow leaf (Sida rhombiforlia, Malvaceae);
FT weed"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Hanoi"
FT /note="acronym: SiYVVNV"
FT /db_xref="taxon:390441"
FT gene 133. .483
FT /gene="AV2"
FT CDS 133. .483
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A5H176"
FT /protein_id="ABG26036.1"
FT /translation="MWDPLLNEFPETVHGLRCMLAVKYCHLLEQTYAPDTVGYDLVRDL
FT ISVIRARDYVEATRRYSHFNARIQGTSTAELRQPRHEPCCCPHCPRHKSKAIVDLQAHE
FT SQTQNVQDVQKP"
FT gene 293. .1066
FT /gene="AV1"
FT CDS 293. .1066
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /db_xref="GOA:A5H177"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A5H177"
FT /protein_id="ABG26035.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPGMSRAAAPTVLVTNRKRSW
FT TYRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSYEARHDIAHVGKVLCVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKVWMDENIKKKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGEHACKEQALVRKFMKINNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1063. .1467)
FT /gene="AC3"
FT CDS complement(1063. .1467)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A5H178"
FT /protein_id="ABG26039.1"
FT /translation="MDFRTGEPITATQAENGAYIWTVNNPLYFKITQHDERPFSTKHDV
FT ITVQVQFNYNLRKALGIHQCFLICQIWTRLRPQTWRFLRVFKYQCMKYLNNLGVISINN
FT VIRAMNHVLYDKLEGTIEAHFSYIIKFNLY"
FT gene complement(1208. .1615)
FT /gene="AC2"
FT CDS complement(1208. .1615)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /db_xref="GOA:A5H179"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A5H179"
FT /protein_id="ABG26038.1"
FT /translation="MQNSSPSRSHCTQVPIKVQHRTAKKRPIRRRRVDLPCGCSYYFGL
FT NCASHGFSHRGTHHCNSGREWRLYLDGQQSPIFQDHPARREAVFDETRRNNSPSPVQLQ
FT PAESVGDTPVFSDLPNLDSFTSSDLAFLKSI"
FT gene complement(1515. .2603)
FT /gene="AC1"
FT CDS complement(1515. .2603)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /db_xref="GOA:A5H180"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A5H180"
FT /protein_id="ABG26037.1"
FT /translation="MPPPRRFRLSAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIK
FT ICRELHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNIIRELAPKDYVLQFH
FT NLNANLDRIFAPPIEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPISIVIEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSAIRDWALKNAEFFTLTEPL
FT YSSTHQSPTPDSEEEAHSEASR"
FT gene complement(2156. .2446)
FT /gene="AC4"
FT CDS complement(2156. .2446)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A5H175"
FT /protein_id="ABG26040.1"
FT /translation="MGALISTCLSSSRENTSARITDSSTWYPQPGQHISIRTYRELNPA
FT PTSSPTSIRTETPSSGASFRSTDDLQEGANNQPMTLTPQHLTQAVSQRLLI"
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SQ Sequence 2753 BP; 706 A; 578 C; 673 G; 796 T; 0 other;
dq641696 Length: 2753 21-DEC-2007 Type: N Check: 9909 ..
1 accggatggc cgcgcgattt tttagggtgg tccccgcacg cgcttttgtc
51 ttccaatcaa aacgctccct caaagctagt ttaaaaaaaa cccgctataa
101 atacttaggg actaagttat gaaggaaata aaatgtggga tccactgttg
151 aacgagtttc cagaaaccgt tcacggtcta cggtgtatgc ttgcggtgaa
201 atactgtcat ctattggagc agacgtacgc gccggatacg gtgggttacg
251 atcttgtcag agacttgata tccgtcatac gagctcgtga ctatgtcgaa
301 gcgacccgcc gatatagtca tttcaacgcc cgcatccaag gtacgtcgac
351 ggctgaactt cgacagccca ggcatgagcc gtgctgctgc ccccactgtc
401 ctcgtcacaa atcgaaagcg atcgtggact tacaggccca tgaatcgcaa
451 acccagaatg tacaggatgt acagaagccc tgatgttcct cgtggatgtg
501 aaggcccgtg taaggtccag tcgtatgaag cccgtcatga tatagcccat
551 gtaggtaagg tattgtgtgt gtctgatgtc acgcgtggta atgggttgac
601 ccatcgagtt ggtaagaggt tttgtgttaa gtccgtgtac gtgttgggta
651 aggtctggat ggatgaaaac atcaagaaga aaaatcacac taacactgtt
701 atgttttttt tagttcgtga tcggagaccg tttgggactc ctcaggattt
751 cggtcaggtg tttaatatgt atgataatga gcctagtacg gcaactgtga
801 agaacgataa tagggatcgt ttccaggtat tgcgtcgatt tcaggcaacg
851 gtcactggtg gagagcacgc gtgtaaggag caagcccttg ttaggaagtt
901 tatgaaaatt aacaatcatg taacctataa tcatcaggag gcagcgaagt
951 atgataacca tactgagaat gcgttgttat tgtatatggc atgtactcat
1001 gctagtaatc cagtgtatgc tacgttgaaa atcaggatct acttctatga
1051 ttctgttcag aattaataaa gattgaattt tattatatat gaaaaatgag
1101 cctcaattgt gccctcgagt ttatcgtaca gtacatgatt cattgcccta
1151 attacattgt taatgctaat tactcctaaa ttgttcaaat acttcatgca
1201 ttgatactta aatactctta agaaacgcca agtctgagga cgtaaacgag
1251 tccagatttg gcagatcaga aaacactggt gtatccccaa cgctttccgc
1301 aggttgtagt tgaactggac ttggactgtt attacgtcgt gtttcgtcga
1351 aaacggcctc tcgtcgtgct gggtgatctt gaaatatagg ggattgttga
1401 ccgtccagat ataggcgcca ttctctgcct gagttgcagt gatgggttcc
1451 cctgtgcgaa aatccatgac ttgcgcaatt gagtccaaaa taataagagc
1501 aaccgcaggg aagatcaacg cgacgcctcc gaatgggcct cttcttcgct
1551 gtccggtgtt ggactttgat gggtacttga gtacaatggc tccgtgaggg
1601 tgaagaattc tgcattcttt aatgcccagt ctctgattgc tgaattcttt
1651 tcctcgtcca agtactcttt atacgatgaa gttggtcctg gattgcaaag
1701 gaagattgtc gggatacctc ctttaatttg aattggtttc ccgtacttcg
1751 tgttgctttg ccagtccctt tgggccccca tgaattcctt gaaatgtttc
1801 aggtagtggg ggtcgacgtc atcgattacg ttgtaccacg catcattgct
1851 gtagaccttt gggcttaggt ccagatgtcc acacagatag ttgtgtgggc
1901 ctagagatcg tgcccacatc gtcttcccgg ttctactctc accctctatg
1951 actatactga tcggtcgcca aggccgcgca gcggcatccc tcacgttctc
2001 tgacacccag cattcaagtt cttctggaac ttggtcgaaa gaagaagaaa
2051 gaaatggaca aacaaaaacc tctataggag gtgcaaaaat cctatctaaa
2101 ttagcattta aattatgaaa ctgtaaaaca taatctttgg gagctaattc
2151 cctaattata ttaagagcct ctgacttact gcctgtgtta agtgctgcgg
2201 cgtaagcgtc attggctgat tgttggcccc ctcttgcaga tcgtccgtcg
2251 atctgaaact cgccccactc gagggtgtct ccgtccttat cgatgtagga
2301 cttgacgtcg gagctggatt tagctccctg tatgttcgga tggaaatgtg
2351 ctgacctggt tggggatacc aggtcgaaga atctgttatt cgtgcagacg
2401 tattttccct cgaactggat aagcacgtgg agatgagggc tcccatcttc
2451 gtgaagttct ctgcagatct tgatgtattt tttatttgtg ggggtgttta
2501 ggttttgtag ttgggaaagt gcctcctctt tggtgagaga gcactgtgga
2551 taagtgagga aataattttt agcagataac ctaaaacgac gcggaggagg
2601 catattgcgc gtcgttttgt atcggtgaca atcaactctg tggaatgaat
2651 tggtgactgg tgtacaatat atagttgtca ccaaatggca ttctcgtaaa
2701 tcctcataga aattcaaaat tcgaattggg aaagcggcca tccgtataat
2751 att