Sequence of DPV Ludwigia yellow vein virus
Ludwigia yellow vein virus segment DNA-A, complete sequence.
ACC No: DQ641708
Dated: 2007-12-21 | Length: 2757 | CRC: -436185739
ID DQ641708; SV 1; circular; genomic DNA; STD; VRL; 2757 BP.
XX
AC DQ641708;
XX
DT 03-MAY-2007 (Rel. 91, Created)
DT 21-DEC-2007 (Rel. 94, Last updated, Version 2)
XX
DE Ludwigia yellow vein virus segment DNA-A, complete sequence.
XX
KW .
XX
OS Ludwigia yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2757
RX PUBMED; 18089756.
RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT "Molecular characterization of begomoviruses and DNA satellites from
RT Vietnam: additional evidence that the New World geminiviruses were present
RT in the Old World prior to continental separation";
RL J. Gen. Virol. 89(PT 1):312-326(2008).
XX
RN [2]
RP 1-2757
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (18-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Institute of Health and Biomedical Innovation, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .2757
FT /organism="Ludwigia yellow vein virus"
FT /segment="DNA-A"
FT /specific_host="primrose willow (Ludwigia octovalvis,
FT Onagraceae); weed"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Hochiminh"
FT /note="acronym: LuYVV"
FT /db_xref="taxon:325111"
FT gene 147. .497
FT /gene="AV2"
FT CDS 147. .497
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A5H1E7"
FT /protein_id="ABG26108.1"
FT /translation="MWDPLEHEFPETVHGFRCMPAIKYLQAVADTYAPDTVGYDLIRDL
FT ISIVRAGNYVEASRRYSHFNTRLQSTSPVELRFPRSEPCCCPHCPRHNPKECLDVQAHV
FT SQAQTVQNVQKP"
FT gene 307. .1080
FT /gene="AV1"
FT CDS 307. .1080
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /db_xref="GOA:A5H1E8"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A5H1E8"
FT /protein_id="ABG26107.1"
FT /translation="MSKRPADIVISTPVSKVRRRLNFDSPGVSRAAARTVLGITRKNAW
FT TYRPTYRKPRLYRMYRSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTH
FT RTGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE
FT PSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYEN
FT HTENALVLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1077. .1481)
FT /gene="AC3"
FT CDS complement(1077. .1481)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A5H1E9"
FT /protein_id="ABG26111.1"
FT /translation="MDFRTGEYITATQAENGVYTWTVRNPLYFKITKHLERPFLRDHDV
FT ITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNVQCMKYLDNLGIISINN
FT VIRAITHVLYDVLEGTIDAQLTHIIKYNLY"
FT gene complement(1222. .1629)
FT /gene="AC2"
FT CDS complement(1222. .1629)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /db_xref="GOA:A5H1F0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A5H1F0"
FT /protein_id="ABG26110.1"
FT /translation="MQNSSSSQSHCTQVPIKVQHRIAKKKSIRRRRVDLPCGCSYFFPI
FT TCANHGFSHRGVHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPEGPRRNNNPGPVQLQ
FT PEESTGDAPVFPDLPDLDSFTSSDWAFLKSI"
FT gene complement(1529. .2617)
FT /gene="AC1"
FT CDS complement(1529. .2617)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /db_xref="GOA:A5H1F1"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A5H1F1"
FT /protein_id="ABG26109.1"
FT /translation="MPRPRSFQIKAKNLFLTYPKCPIPKEEALELIKAIQCPSDKLFVR
FT VAQEKHSDGTLHLHALIQFKGKAQFRNPRHFDITHPNTSSQFHPNFQGAKSSSDVKSYI
FT EKDGDYVDWGVFQVDGRSARGGQQTANDAAAEALNAGSKEAALSIIREKLPKEYIFQFH
FT NLNSNLDRIFSPPAEVFVSPFLASSFDQVPEELECWAEENVRDAAARPWRPVSIVIEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAEFIFLSEPL
FT YSGTHQSPAQNSQEEVNTPEES"
FT gene complement(2203. .2460)
FT /gene="AC4"
FT CDS complement(2203. .2460)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A5H1F2"
FT /protein_id="ABG26112.1"
FT /translation="MGLCISMPSSNSRVKPNSEIPGTLTLRIPTPPHNSIRTSKEPSPV
FT LMSSPTSRRTVITSTGVYFKSTEDLLEEVSRRLMMQQQKR"
XX
SQ Sequence 2757 BP; 707 A; 604 C; 657 G; 789 T; 0 other;
dq641708 Length: 2757 21-DEC-2007 Type: N Check: 6225 ..
1 accggatggc cgcgcaaatt tttcccccct ttcactttag tggtccccac
51 gcactatttt ttgtcggcca atgagaatgc gcgttgaaag cttagatatc
101 cttgtggtcc cgccataaat aacttcccct cgaaggtaaa ttcaaaatgt
151 gggatccgtt ggaacacgag tttccggaaa ctgtgcacgg tttccgttgt
201 atgcccgcga tcaaatactt gcaggctgta gcggatacgt atgctccgga
251 tacggtaggt tacgatctta ttcgtgattt aatttctatt gtacgagctg
301 gcaactatgt cgaagcgtcc cgccgatata gtcatttcaa cacccgtctc
351 caaagtacgt cgccggttga acttcgattc ccccggagtg agccgtgctg
401 ctgcccgcac tgtcctcggc ataacccgaa agaatgcctg gacgtacagg
451 cccacgtatc gcaagcccag actgtacaga atgtacagaa gccctgatgt
501 tcctcggggc tgtgagggtc catgtaaggt tcagtcgttc gagaagaagc
551 atgatgtggg tcatactggt acattattat gtgtgtccga tgttactcgt
601 ggaaatgggt taactcatcg cactgggaag aggttctgta ttaagtctat
651 ttacattctg ggtaagttat ggatggatga gaacatcaag acgaagaatc
701 acacgaacac ggtcatgttc tggttagtta gggataggcg tcctgtcact
751 acgccctatg ggtttggtga ggcattcaac atgtacgaca atgagcccag
801 tacagccact atcaagaacg atcttcgtga tcgtctgcag gtgctgcata
851 ggtttcaagc cactctcaca ggaggtcagt acgcgtgcaa ggagcaggtc
901 atggtgaaga ggttctggaa gatcaacaat cacgttgtct acaaccatca
951 ggagaaggct gcttacgaga atcacactga gaacgcatta gtattgtata
1001 tggcatgtac tcatgcctct aaccccgtgt atgctacatt gaagatccgc
1051 atctacttct atgattcagt ccagaattaa taaagattat attttattat
1101 atgtgtcagt tgagcatcaa ttgtgccctc cagtacatcg tacaatacat
1151 gagttatagc cctaattaca ttgttaatac taataatgcc taagttatct
1201 aagtacttca tacattgaac attaaatact cttaagaaac gcccagtctg
1251 aggacgtaaa cgagtccaga tctggcagat caggaaacac tggtgcatcc
1301 ccagtgcttt cctcaggttg tagttgaact ggacctggat tgttattacg
1351 tcgtggtccc tcaggaatgg cctctccagg tgcttggtaa tcttgaaata
1401 gaggggattt ctgaccgtcc aggtatagac gccattctct gcctgagttg
1451 cagtgatgta ctccccggtg cgaaaatcca tggttggcac aggtaattgg
1501 aaagaagtat gagcagccgc agggtagatc aactctcctc cggcgtattg
1551 acttcttctt ggctattctg tgctggactt tgatgggtac ctgagtacag
1601 tggctctgag aggaagatga attctgcatt cttcagtgcc caggatttta
1651 gagctgaatt cttatcctcg tccagatatt ccttatatga tgatgttggt
1701 ccaggattgc atagaaagat tgtcggaatg ccccctttaa tttgaatggg
1751 cttcccgtac ttggtattgc tttgccaatc cctctgggcc cccatgaatt
1801 ctttaaagtg ctttagataa tgggggtcca catcatcgat gacgttatac
1851 catgcgtcat ttgagtagat cttggggctc aagtctagat gcccacaaag
1901 gtaattatgt gggcctagag acctggccca cattgtcttc ccagttctac
1951 tctctccctc tattactata ctgaccgggc gccaaggccg cgcagcggca
2001 tccctgacgt tctcttccgc ccaacattca agttcttccg gaacttgatc
2051 gaatgaagaa gctaaaaaag gagaaacaaa aacctctgca ggaggtgaaa
2101 aaatcctatc taaattagaa tttaaattgt gaaattgaaa tatatattct
2151 ttaggtaatt tctctctaat aatagataaa gcagcttcct ttgaacctgc
2201 attcagcgct tctgctgctg catcattagc cgtctgctga cctcctctag
2251 cagatcttcc gtcgacttga aatacacccc agtcgacgta atcaccgtcc
2301 ttctcgatgt aggacttgac atcagaactg gacttggctc cttggaagtt
2351 cggatggaat tgtgaggagg tgttgggatg cgtaatgtca aagtgcctgg
2401 gatttctgaa ttgggcttta cccttgaatt ggatgagggc atggagatgc
2451 agagtcccat cggagtgttt ctcttgagct actctgacaa ataatttatc
2501 agatgggcat tgaatagcct ttataagctc tagggcttct tctttaggaa
2551 tagggcattt gggataggtg agaaataagt ttttggcttt tatttggaat
2601 gaacgaggac gaggcatggt gagaggtata ttgggggctc tcaaaactct
2651 acggaatggg gtgcttgggg tgcctattta tgttgagccc cctaatggca
2701 gatttgtaat ttgcaaagaa aatttcaaat tccaaaagcg gccatccgta
2751 taatatt