Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate PRSV-AP Ko polyprotein gene, partial cds.

ACC No: DQ666638

Dated: 2006-07-19 | Length: 1763 | CRC: 471757052

                
ID   DQ666638; SV 1; linear; genomic RNA; STD; VRL; 1763 BP.
XX
AC   DQ666638;
XX
DT   19-JUL-2006 (Rel. 88, Created)
DT   19-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Papaya ringspot virus isolate PRSV-AP Ko polyprotein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1763
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   "Sequence diversity in 3' terminal region of Papaya ringspot virus isolates
RT   from south India";
RL   Unpublished.
XX
RN   [2]
RP   1-1763
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   ;
RL   Submitted (02-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL   Pradesh 517502, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1763
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="PRSV-AP Ko"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .1557
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABG72801.1"
FT                   /translation="GNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKAQEDMCVFYING
FT                   DDLCIAIHPDHEHVLDSFSSSFAELGLKYDFTQRHRNKQDLWFMSHRGILIDNVYIPKL
FT                   EPERIVAILEWDKSKLPEHRLEAITAAMIESWGYDELTHQIRRFYQWVLEQAPFNELAR
FT                   QGRAPYVSEVGLRRLYTSERGSMDELEAYIDKYFERERGDFPELLVYHESMSSDNHQII
FT                   YHLNEHVYHQSKTEAVDAGLNDKLKEKEKEKDKEREKEKKDKKDASDGSDVSTSTKTGE
FT                   RDRDVNAGTSGTFTVPRIKLFTDKMMLPRIKGKVVLNLNHLLQYNPQQIDISNTRATQS
FT                   QFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDITGVWVMMDGETQVDYPIKP
FT                   LIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVN
FT                   SKTPDRAREAHMQMKAAALRNSNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMR
FT                   N"
FT   mat_peptide     <1. .636
FT                   /product="nuclear inclusion protein b"
FT   mat_peptide     637. .1554
FT                   /product="capsid protein"
FT   3'UTR           1558. .1763
XX
SQ   Sequence 1763 BP; 545 A; 311 C; 428 G; 479 T; 0 other;

dq666638 Length: 1763  19-JUL-2006  Type: N  Check: 5291  ..

       1  ggaaacaaca gcgggcaacc ttcgacagtt gtcgataata cattgatggt
      51  tttaatcaca atgtattatg cattgcggaa ggctggttac gatacgaagg
     101  ctcaagaaga tatgtgcgtg ttttatatca atggtgatga tctctgtatc
     151  gccattcacc cggaccatga gcatgttctt gattcattct ctagttcatt
     201  tgctgaactt gggcttaagt atgacttcac acaaagacat aggaataaac
     251  aggatttgtg gttcatgtca catcgaggta ttctgatcga taacgtttac
     301  attccgaaac ttgaacctga gcgaattgtc gcaattcttg agtgggacaa
     351  atctaagctt ccggagcatc gcttggaagc aatcacagca gcaatgatag
     401  agtcatgggg ttatgatgag ctaacacacc agatccgcag attttaccaa
     451  tgggttcttg agcaagctcc attcaatgag ttggctaggc aagggagagc
     501  tccttacgtt tcggaagttg ggctaagaag gttgtatact agtgagcgtg
     551  gttcgatgga tgagttggaa gcatatattg ataaatactt cgaacgagag
     601  cgtggagatt ttcctgagtt attggtgtat catgaatcaa tgagttcaga
     651  taatcatcag attatctatc acttgaatga acatgtttat catcaatcca
     701  agactgaagc ggtggatgca ggtctcaatg ataagctgaa ggagaaagag
     751  aaggaaaaag ataaagagag agaaaaagaa aagaaagaca agaaggacgc
     801  tagtgacgga agcgatgtgt caactagcac aaaaactgga gagagagata
     851  gagatgttaa tgctggaact agtggcacat tcacagttcc aagaatcaaa
     901  ttatttactg ataaaatgat gttgcctaga attaagggga aagttgtcct
     951  taatttgaat catcttcttc agtataatcc acagcagatt gacatctcaa
    1001  acactcgtgc cacgcaatca cagtttgaga agtggtatga gggagtgagg
    1051  aatgactatg gccttaatga taatgaaatg caagtgatgt taaatggttt
    1101  aatggtttgg tgtatcgaaa atggtacatc cccagacata actggtgtct
    1151  gggttatgat ggatggtgag actcaggttg attatccaat taaaccgtta
    1201  attgaacatg caactccttc gtttaggcaa atcatggctc atttcagtaa
    1251  cgcggcagaa gcatatatcg caaagcgaaa tgcaactgag aggtacatgc
    1301  cgcggtatgg aatcaagaga aatttgactg acattagcct cgctagatat
    1351  gctttcgatt tctatgaggt gaactcaaaa acgcctgata gagctcgaga
    1401  ggctcatatg cagatgaaag cagctgcact gcgaaactca aatcgcagaa
    1451  tgtttggaat ggacggtagt gtcagtaaca aggaagaaaa cacggagaga
    1501  cacacagtgg aagatgtcaa tagagacatg cactctctcc tgggtatgcg
    1551  caactaaata tccgcacttg tgtgtttgtc gtgccctgca cgaccctgtt
    1601  tcaccttata atactatata agcattagaa tacagtgtgg ttttaccacc
    1651  gcttctattt tatagtgagg gtggccctcc gtgcttttag tattattcga
    1701  gttctctgag tctccataca gtgtgggtgg cccacgtgtt atttgagcct
    1751  cttagaatga gag