Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate PRSV-KA Gu polyprotein gene, partial cds.

ACC No: DQ666639

Dated: 2006-07-19 | Length: 1709 | CRC: -226041524

                
ID   DQ666639; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   DQ666639;
XX
DT   19-JUL-2006 (Rel. 88, Created)
DT   19-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate PRSV-KA Gu polyprotein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   "Sequence diversity in 3' terminal region of Papaya ringspot virus isolates
RT   from south India";
RL   Unpublished.
XX
RN   [2]
RP   1-1709
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   ;
RL   Submitted (02-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL   Pradesh 517502, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1709
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="PRSV-KA Gu"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .1503
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABG72802.1"
FT                   /translation="ITMYYALRKAGYDTKAQEDMCVFYINGDDLCIAIHPDHEHVLDSF
FT                   SSSFAELGLKYDFTQRHRNKQDLWFMSHRGILIDDIYIPKLEPERIVAILEWDKSKLPE
FT                   HRLEAITAAMIESWGYGELTHQIRKFYQWVLDQAPFNELARQGRAPYVSEVGLRRLYTS
FT                   ERGSMEELEAYIDKYFERERGDAPELLVYHESKSLNDHQIICHINEHVYHQSKTEAVDA
FT                   GFNDKLKEKEKEKDKEREKEKKDKKDAGDGGYVSTSTKTGERDKDVNVGTSGTFTVPRI
FT                   KSFTDKMILPRIKGKAVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYDLSDN
FT                   EMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSN
FT                   AAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAA
FT                   LRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .582
FT                   /product="nuclear inclusion protein b"
FT   mat_peptide     583. .1500
FT                   /product="capsid protein"
FT   3'UTR           1504. .1709
XX
SQ   Sequence 1709 BP; 526 A; 312 C; 416 G; 455 T; 0 other;

dq666639 Length: 1709  19-JUL-2006  Type: N  Check: 9877  ..

       1  atcacaatgt attacgcgct acggaaggct ggttacgata cgaaggctca
      51  agaagatatg tgtgtgtttt atatcaatgg tgatgatctc tgtattgcca
     101  ttcacccgga tcatgagcat gttcttgact cattctctag ctcgtttgct
     151  gaacttgggc ttaagtatga tttcacacaa agacatagga ataaacagga
     201  tttgtggttc atgtcacatc gaggtattct gatcgatgac atctacattc
     251  caaaacttga gcctgagcgg attgttgcaa ttcttgagtg ggacaaatcc
     301  aagcttccgg agcatcgctt ggaggcaatc acagcagcaa tgatagaatc
     351  atggggttat ggtgagctaa ctcaccagat ccgtaaattt taccaatggg
     401  ttcttgatca agctccgttc aatgaattgg ctaggcaagg gagagcccct
     451  tacgtctcgg aagttggatt aagaaggctg tatacgagtg agcgtggttc
     501  gatggaagag ttggaagcat atattgataa atacttcgaa cgtgagcgtg
     551  gagatgctcc tgagctattg gtttaccatg aatcaaaaag tttaaatgat
     601  catcaaatta tctgtcacat aaatgaacat gtttatcatc aatccaagac
     651  cgaagcggtg gatgcgggtt tcaatgataa gctgaaggag aaagaaaaag
     701  aaaaagataa agagagagaa aaagaaaaga aagacaagaa ggatgctggt
     751  gacggaggtt atgtgtcaac tagcacaaaa actggagaga gagataaaga
     801  tgtcaatgtt gggactagtg gtacattcac agttccaagg atcaagtcat
     851  ttactgataa aatgattttg cccagaatta aggggaaagc tgtccttaat
     901  ttgaatcatc ttcttcagta taatccacag caaattgaca tctcaaacac
     951  tcgtgccaca caatcacagt ttgagaagtg gtatgaggga gtgaggaatg
    1001  actatgacct tagtgataat gaaatgcaag tgatgttgaa tggcttaatg
    1051  gtttggtgta tcgaaaatgg tacatcccca gacatatctg gtgtctgggt
    1101  catgatggat ggtgagactc aagtcgatta cccaattaaa ccattaattg
    1151  aacatgcaac tccttcattt aggcaaatca tggctcactt cagtaacgcg
    1201  gcagaagcat atatcgcgaa gcgaaatgca actgagagat acatgccgcg
    1251  gtatggaatc aagagaaatt tgactgacat tagcctcgct agatatgctt
    1301  tcgatttcta tgaggtgaat tcaaaaacac ctgatagagc tcgagaggct
    1351  catatgcaga tgaaggcagc tgcactgcgg aacacaaatc gcagaatgtt
    1401  tggaatggac ggcagtgtca gtaacaagga agaaaacacg gagagacaca
    1451  cagtggaaga tgtcaataga gacatgcact ctctcctggg tatgcgcaac
    1501  tgaatatccg cgcttgtgtg tttgtcgggc cttgctcgac cctgtttcac
    1551  cttataatac tatatgagca ttagaataca gtgtggtctt accaccgctt
    1601  ctactttata gtgagggtgg ccctccgtgc ttttagtatt attcgagttc
    1651  tctgagtctc catacagtgt gggtggccca cgtgttattc gagcctctta
    1701  gaatgagag