Sequence of DPV Sweet potato chlorotic stunt virus

Sweet potato chlorotic stunt virus isolate 45-3S coat protein (CP) gene, complete cds.

ACC No: DQ864342

Dated: 2008-03-20 | Length: 774 | CRC: 1215102166

                
ID   DQ864342; SV 1; linear; genomic RNA; STD; VRL; 774 BP.
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AC   DQ864342;
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DT   01-AUG-2007 (Rel. 92, Created)
DT   20-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Sweet potato chlorotic stunt virus isolate 45-3S coat protein (CP) gene,
DE   complete cds.
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KW   .
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OS   Sweet potato chlorotic stunt virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
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RN   [1]
RP   1-774
RA   Aritua V., Barg E., Adipala E., Gibson R.W., Vetten J.H.;
RT   "Further Evidence for Limited Genetic Diversity among East African Isolates
RT   of Sweet potato chlorotic stunt virus";
RL   J. Phytopathol. 156(3):181-189(2008).
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RN   [2]
RP   1-774
RA   Aritua V., Barg E., Adipala E., Gibson R.W., Vetten J.H.;
RT   ;
RL   Submitted (21-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   National Agricultural Biotechnology Centre, Kawanda Agricultural Research
RL   Institute, PO Box 7065, Kampala, Uganda
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FH   Key             Location/Qualifiers
FH
FT   source          1. .774
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /specific_host="Ipomoea batatas"
FT                   /isolate="45-3S"
FT                   /serotype="East African"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /collected_by="Elijah Ateka, Kari-Nairobi"
FT                   /db_xref="taxon:81931"
FT   gene            1. .774
FT                   /gene="CP"
FT   CDS             1. .774
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A7J206"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:A7J206"
FT                   /protein_id="ABI94406.1"
FT                   /translation="MDTDKVNDDKNFDSDSDVGFGDRNENDNLRRRSDTIDNENVNNVG
FT                   RRDMELTSGILTSEQLALARLGKIQVYSNSPDIMSKSQEDEFKRHMESFVRQITGETTL
FT                   SPEIFAGFYASLFQAWANQSTSEKNASNANLENVFMVNGKEYSWRTHSFINHMQSNMPD
FT                   VKNAARKWARAHANDYKVLVGLGIVKPDYHLQAKQGVLPEYWHLATDFMRGNDMATTAD
FT                   GLAATLMMKRNALCNKDNKNSIYNVTQLTGTGLHC"
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SQ   Sequence 774 BP; 257 A; 138 C; 183 G; 196 T; 0 other;

dq864342 Length: 774  20-MAR-2008  Type: N  Check: 1201  ..

       1  atggatactg acaaagtaaa cgatgacaag aactttgact ctgactccga
      51  tgtaggtttc ggggacagga atgagaacga taatctacga agacgttccg
     101  atacgattga caacgaaaac gtcaacaatg tgggaagaag agacatggag
     151  ttaaccagtg gtatattaac atctgagcaa ctggctcttg cgaggttggg
     201  aaaaatacag gtttattcta actcaccaga cattatgtct aagagtcaag
     251  aagatgaatt caagagacac atggagagtt ttgtgaggca aattacaggg
     301  gaaactacat tatctccaga gatttttgca ggtttctacg catctctatt
     351  ccaagcttgg gcaaaccaaa gtacttcgga aaagaacgcg tcgaatgcaa
     401  atctcgagaa tgtattcatg gttaatggta aggagtacag ttggagaact
     451  catagtttca tcaatcacat gcaatccaat atgcccgacg tgaagaatgc
     501  tgctaggaaa tgggccaggg ctcacgcaaa tgattataag gttcttgttg
     551  gtttgggtat agtaaaacct gactatcatt tgcaagctaa acaaggcgta
     601  ttaccggagt attggcatct tgcaaccgac ttcatgagag gtaatgacat
     651  ggcgacgact gcagatggat tagcagcaac actgatgatg aaaaggaacg
     701  ctctttgtaa caaggacaac aagaattcta tttataacgt aactcaattg
     751  actggtactg gtcttcactg ttga