Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate Bodles CP4 coat protein gene, partial cds.

ACC No: DQ871301

Dated: 2007-09-11 | Length: 789 | CRC: 297551416

                
ID   DQ871301; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   DQ871301;
XX
DT   03-SEP-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
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DE   Tobacco etch virus isolate Bodles CP4 coat protein gene, partial cds.
XX
KW   .
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OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-789
RA   Spence A., Tolin S.A., McLaughlin W.A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
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FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Tobacco etch virus"
FT                   /isolate="Bodles CP4"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>789
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q0GDZ1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDZ1"
FT                   /protein_id="ABI34572.1"
FT                   /translation="SGTVDAGADAGKKKDQKDGKVAEQTSKDRDVNAGASGTFSVPRID
FT                   AMATKLQYPRMKGEVVVNLNHLLGYKPQQIDLSNARATHEQFAAWHQAVMTAYGVNEEQ
FT                   MKILLNGFMVWCIENGTSPNLNGTWVMMDGEEQVSYPLKPMIENAQPTLRQIMTHFSDL
FT                   AEAYIEMRNRERPYMPRYGLQRNITDMSLSRYAFDFYELTSKTPVRAREAHMQMKAAAV
FT                   RNSGTRLFGLDGNVGTAEEDTERHTAHDVNRNMHTLLGVRQ"
XX
SQ   Sequence 789 BP; 248 A; 150 C; 216 G; 175 T; 0 other;

dq871301 Length: 789  11-SEP-2007  Type: N  Check: 6302  ..

       1  agtggtactg tggacgctgg tgctgatgct ggcaagaaga aagatcaaaa
      51  ggacggaaaa gtcgctgaac agacttcaaa ggatagggat gtgaatgctg
     101  gagcttcagg aacattctca gttccacgaa tagacgctat ggccacaaaa
     151  cttcagtatc caaggatgaa aggggaagtg gttgttaact tgaatcacct
     201  tttgggatac aagccacagc aaattgattt gtcaaatgct cgagccacac
     251  atgagcagtt tgctgcgtgg catcaggcag tgatgacagc ctatggagtg
     301  aatgaagagc aaatgaaaat attgctaaat ggatttatgg tgtggtgtat
     351  agaaaatggg acttctccaa atttgaacgg aacttgggtc atgatggatg
     401  gtgaggagca agtttcatac ccactgaaac caatgattga gaatgcgcag
     451  ccaacactga ggcaaattat gacacacttc agtgacctgg ctgaagcgta
     501  cattgaaatg aggaacaggg agcgaccata catgcctagg tatggtctac
     551  agagaaacat tacagacatg agtttgtcgc gctatgcgtt cgacttctat
     601  gagctcactt cgaaaacacc cgtaagagcg agggaggcgc atatgcaaat
     651  gaaagctgct gcagtacgaa acagtggaac taggttattt ggtcttgatg
     701  gcaacgtggg tactgcagag gaagacactg aacggcacac agcgcatgat
     751  gtgaaccgta acatgcacac actattaggg gtccgccag