Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate CARDI CP2 coat protein gene, partial cds.

ACC No: DQ871309

Dated: 2007-09-11 | Length: 789 | CRC: 1713972424

                
ID   DQ871309; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   DQ871309;
XX
DT   03-SEP-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI CP2 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-789
RA   Spence A., Tolin S.A., McLaughlin W.A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI CP2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>789
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q0GDY3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDY3"
FT                   /protein_id="ABI34580.1"
FT                   /translation="GGTVDADADAGKKKDQKVDKVAEQASKDRDVNAGTSGTFSVPRIN
FT                   AMATKLQYPRMRGEVVVNLNHLLGYKPQQIDLSNARATHEQFAAWHQAVMTAYGVNEEQ
FT                   MKILLNGFMVWCIENGTSPNLNGTWVMMDGEEQVSYPLKPMVENAQPTLRQIMTHFSDL
FT                   AEAYIEMRNRERPYMPRYGLQRNITDMSLSRYAFDFYELTSKTPVRAREAHMQMKAAAV
FT                   RNSGTRLFGLDGNVGTAEEDTERHTAHDVNRNMHTLLGVRQ"
XX
SQ   Sequence 789 BP; 250 A; 148 C; 212 G; 179 T; 0 other;

dq871309 Length: 789  11-SEP-2007  Type: N  Check: 68  ..

       1  ggtggcactg tggatgctga tgctgacgct ggtaagaaga aagaccaaaa
      51  ggttgataaa gttgctgagc aggcttcaaa ggatagggat gttaacgctg
     101  gaacttcagg aacattctca gttccacgaa taaatgctat ggccacaaaa
     151  ctccaatatc caagaatgag gggagaggta gttgtaaact tgaatcacct
     201  tttaggatac aagccacagc agattgattt gtcaaatgct cgggccacac
     251  atgagcagtt tgccgcgtgg catcaggcag tgatgacagc ctatggagtg
     301  aatgaagagc aaatgaaaat attgctaaat ggatttatgg tgtggtgcat
     351  agaaaatggg acttccccaa atttgaacgg aacttgggtc atgatggatg
     401  gtgaggagca agtttcatac ccgctgaaac caatggttga aaacgcgcag
     451  ccaacactga ggcaaattat gacacacttc agtgatctgg ctgaagcgta
     501  tattgaaatg aggaacaggg agcgaccata catgcctagg tatggtttac
     551  agagaaatat tacagacatg agtttgtcac gctatgcgtt cgacttctat
     601  gagctaactt caaaaacacc tgttagagcg agggaggcgc atatgcaaat
     651  gaaagctgct gcagtacgaa acagtggaac taggttattt ggtcttgatg
     701  gcaacgtggg tactgcagag gaagacactg aacggcacac agcacatgat
     751  gtgaaccgta acatgcacac actattaggg gtccgccag