Sequence of DPV Tobacco etch virus

Tobacco etch virus isolate UWI CP4 coat protein gene, partial cds.

ACC No: DQ871329

Dated: 2007-09-11 | Length: 789 | CRC: 1992090995

                
ID   DQ871329; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   DQ871329;
XX
DT   03-SEP-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate UWI CP4 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-789
RA   Spence A., Tolin S.A., McLaughlin W.A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Tobacco etch virus"
FT                   /isolate="UWI CP4"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1. .>789
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q0GDW3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDW3"
FT                   /protein_id="ABI34600.1"
FT                   /translation="GGTVDAGADAGKKKDQKDDRVAEQASKDRDVNAGTSGTFSVPRIN
FT                   AMATKLQYPRMKGEVVVNLSHLLGYKPQQIDLSNACATHEQFAAWHQAVMTAYGVNEEQ
FT                   MKILLNGFMVWCIENGTSPNLNGTWVMMDGEEQVSYPLKPMVENAQPTLRQIMTHFSDL
FT                   AEAYIEMRNRERPYMPRYGLQRNITDMSLSRYAFDFYELTSKTPVRAREAHMQMKAAAV
FT                   RNSGTRLFGLDGNVGTAEEDTERHTAHDVNRNMHTLLGVRQ"
XX
SQ   Sequence 789 BP; 247 A; 151 C; 216 G; 175 T; 0 other;

dq871329 Length: 789  11-SEP-2007  Type: N  Check: 7100  ..

       1  ggtggcactg tggatgctgg tgctgacgct ggcaagaaga aagaccaaaa
      51  ggatgataga gtcgctgagc aggcttcaaa ggatagggat gtaaatgctg
     101  gaacttcagg aacattctca gtcccaagaa taaatgctat ggccacaaag
     151  cttcaatacc caaggatgaa aggggaagtg gttgtgaact tgagtcacct
     201  tttgggatac aaaccacagc aaattgattt gtcaaatgct tgtgccacac
     251  atgagcagtt tgctgcgtgg catcaggcag tgatgacagc ctatggagta
     301  aatgaagagc aaatgaaaat attgctaaat ggatttatgg tgtggtgcat
     351  agaaaatggg acttccccga acttgaatgg aacttgggtc atgatggatg
     401  gtgaggaaca agtttcgtac ccgctgaaac caatggttga aaacgcgcag
     451  cccacactga ggcagattat gacacacttc agtgacctgg ctgaagcgta
     501  cattgaaatg aggaacaggg aacgaccata tatgcctagg tatggtctac
     551  agagaaacat tacagacatg agtttgtcac gctatgcgtt cgacttctat
     601  gaactaactt cgaaaacacc tgttagagcg agggaggcgc atatgcaaat
     651  gaaagctgct gcagtacgaa acagtggaac taggttattt ggtcttgatg
     701  gcaacgtggg tactgcagag gaagacactg aacggcacac agcgcatgat
     751  gtgaaccgta acatgcacac actattaggg gtccgccag