Sequence of DPV Sida yellow mosaic Yucatan virus
Sida yellow mosaic Yucatan virus segment DNA-B, complete sequence.
ACC No: DQ875873
Dated: 2007-08-01 | Length: 2586 | CRC: 169724509
ID DQ875873; SV 1; linear; genomic DNA; STD; VRL; 2586 BP.
XX
AC DQ875873;
XX
DT 26-SEP-2006 (Rel. 89, Created)
DT 01-AUG-2007 (Rel. 92, Last updated, Version 3)
XX
DE Sida yellow mosaic Yucatan virus segment DNA-B, complete sequence.
XX
KW .
XX
OS Sida yellow mosaic Yucatan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2586
RX PUBMED; 17638064.
RA Hernandez-Zepeda C., Idris A.M., Carnevali G., Brown J.K.,
RA Moreno-Valenzuela O.A.;
RT "Molecular characterization and phylogenetic relationships of two new
RT bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico";
RL Virus Genes 35(2):369-377(2007).
XX
RN [2]
RP 1-2586
RA Hernandez-Zepeda C., Moreno-Valenzuela O.A., Brown J.K.;
RT ;
RL Submitted (01-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Unidad de Bioquimica y Biologia Molecular de Plantas, Centro de
RL Investigacion Cientifica de Yucatan (CICY), Calle 43 No. 130, Merida,
RL Yucatan 97200, Mexico
XX
FH Key Location/Qualifiers
FH
FT source 1. .2586
FT /organism="Sida yellow mosaic Yucatan virus"
FT /segment="DNA-B"
FT /specific_host="Sida acuta"
FT /mol_type="genomic DNA"
FT /country="Mexico:Yucatan"
FT /db_xref="taxon:408719"
FT gene 391. .1161
FT /gene="BV1"
FT CDS 391. .1161
FT /codon_start=1
FT /gene="BV1"
FT /product="BV1"
FT /note="NSP"
FT /db_xref="GOA:Q06HP0"
FT /db_xref="UniProtKB/TrEMBL:Q06HP0"
FT /protein_id="ABI85411.1"
FT /translation="MYHVRGKRVGYFTNRRFNSRNNVFNRSIYGKRHDGKRRGGRSVKP
FT TAEPNMSSQTIHENQYGTDFVMAHNSAISTFISYPDLGKIEPGRSRSYIKLKRLRFKGT
FT VKIERVQSDVNMDGSVPKIEGVFSLVVVVDRKPHLGPSGLLHTFDELFGAIIHSHGNLS
FT IVPSLKDRYYIRHVFKRVLSLENDTLMVDVEGSTALSNRRFNCWSTFKDVDRDSCKGVY
FT DNISKNALLIYYCWVSDTPSKASNYVSFDLDYVG"
FT gene complement(1222. .2103)
FT /gene="BC1"
FT CDS complement(1222. .2103)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /note="MP"
FT /db_xref="UniProtKB/TrEMBL:Q06HN9"
FT /protein_id="ABI85412.1"
FT /translation="MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQFTAR
FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESQQATWTFPIRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFSHVGYGKWERKPIRCASMSRVGLRGPIEIRPGESWASRSNIGTCQSDAD
FT SEVENELHPYRHLNRLGTSVLDPGESASIVGTQRAESNITMSMGQLNELVRTTVQECIN
FT NNCQATQAKSLK"
XX
SQ Sequence 2586 BP; 644 A; 529 C; 607 G; 806 T; 0 other;
dq875873 Length: 2586 01-AUG-2007 Type: N Check: 6240 ..
1 accggatggc cgcgctttgg ggtacgctcc cccccctggt gacgcgcgct
51 cccctggtgt ggtgtcttgc acgcgccctc ctattggtgc tggtccttca
101 cgctccggct tttgagtggc ctttaattta aattaaagga tgatgctttg
151 tcgcgcgaac tgcttttatg agttgaatta ttgtcgcgcg atgtctgact
201 agggcccatt gtactatgtg aaggacgtgg ctatttattg accatgtcgc
251 tgcgtttatt tgtgaataat gttggaccaa ttatttatat aatgtaatgg
301 atatgtgtgt catgtagaac atacgcagcg tctaaacacg tttacttttg
351 tatttatatt tgtgttttat ccttttttta cattgtgatt atgtatcatg
401 tgaggggtaa acgtgttggt tacttcacta atcgacgttt taactcacgt
451 aataatgtgt ttaaccgttc aatctatggg aaacgacatg acgggaaacg
501 tcgaggaggt cgatctgtca agcccactgc tgagcccaat atgtcatccc
551 aaaccataca tgagaatcag tatggcactg actttgtcat ggcccataat
601 tcagctatct cgacgttcat cagttaccca gacttgggca agattgaacc
651 gggtcgaagc agatcctata tcaagttgaa acgactccgt ttcaaaggga
701 ctgtgaagat tgaacgtgtt caatcggatg tgaacatgga cggttctgtc
751 ccgaaaatag aaggagtatt ctccctcgtt gttgttgtgg atcggaaacc
801 ccacttgggt ccaagtggtt tactgcatac attcgacgag ctgttcggag
851 caatcattca cagtcatggc aatctcagca ttgtcccttc actgaaagac
901 cgttattata ttcgccacgt gttcaaacgt gtattgtcat tggagaatga
951 cacgctaatg gtcgatgtgg aaggatctac agctttatct aacaggcgtt
1001 ttaattgttg gtccactttc aaggacgttg atcgtgattc atgcaagggt
1051 gtttatgata atataagcaa gaacgccctg ttaatttatt attgctgggt
1101 gtcggatacg ccctcgaagg catccaatta tgtatctttt gatcttgatt
1151 atgttggtta atgtaataaa tattatttat ccaaaattga ttatcttatt
1201 acgagaaatc aaaatatata tttatttcaa tgatttggcc tgagtagcct
1251 gacagttatt attaatacat tcttggaccg ttgtccgaac tagctcgttc
1301 aactggccca ttgacattgt gatgttggac tccgctctct gggttcccac
1351 gatggaagca gactctcctg gatctagaac gctcgtcccg agcctgttca
1401 ggtgtctgta tgggtggagc tcgttctcca cctccgagtc cgcgtctgat
1451 tggcacgtac ctatgttact cctggaagcc cacgactcac caggccttat
1501 ttcaattggg cctctaagcc caactctgga catggacgcg catctgatgg
1551 gcttcctctc ccatttcccg tagcccacat gggaaaagtc cacatctttg
1601 tctgtgaact gtttggacag gatcttcact gttggtgccc ggaaggggat
1651 atccacggag tgttttgcgg tggacaattt cagtttccct ttgaacttgg
1701 cgaagtgggt cctctgatga acattcgtat cgcatacgcg atagtacaac
1751 ttccatggaa ttgggtcctt cagggagaag aacgaagccg agaagtagtg
1801 gagatctatg ttacacctga tcggaaaagt ccacgtggct tgttgtgatt
1851 cgttgtccgt catccttttg tcgtggatct ccactattac cgaccccgtc
1901 gcgttgatcg gcacctgttg tctgtattct atgacgcagt gatctatttt
1951 catgcagcta cgactgagtc tcgccgtaaa ctgcgacgcc gtcgaaggaa
2001 attgcagaat tatctcagtt aagtcatgag aaagctgata ctcgtctcgg
2051 tgagattcta tgtagttgaa agcgttagga ggattgacta actgagaatc
2101 catctgaaga agaaaggccg cgcagcggaa ccgattgttg aagttgaatc
2151 gggaagaaga tgaacaactg atgaacaaga tgatcaactc tggaaagccc
2201 tcctttgatc tcgaagaagg taaacgttta actttttata tgggtttaat
2251 aatatctgat gatttctgtg tttgagaatg ctcgactatg atcttctgtt
2301 aataatttat tttttttttg agaaagaaag gagtgttgat gaagagttta
2351 agataaatca ggaaatggag gagtttgtct attaacccag acttgctggg
2401 tttctggtat ttaaattggt aaagtgttca tctgacgctc aaccgatggc
2451 atttttgtaa taagaagtgt gtaccccgga tgagctctca aacttctgtg
2501 ttatgaattg gggtaatggg ttacaatata tactataacc ctcatttacg
2551 gatttgcaac acgtggcggc catccgctat aatatt