Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus clone Vol55c3 segment RNA2 polyprotein gene, complete cds.
ACC No: DQ922673
Dated: 2009-07-31 | Length: 3333 | CRC: 126482321
ID DQ922673; SV 1; linear; genomic RNA; STD; VRL; 3333 BP.
XX
AC DQ922673;
XX
DT 19-SEP-2006 (Rel. 89, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 2)
XX
DE Grapevine fanleaf virus clone Vol55c3 segment RNA2 polyprotein gene,
DE complete cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-3333
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT "Genetic variability within RNA2 of Grapevine fanleaf virus";
RL Eur. J. Plant Pathol. 117(3):307-312(2007).
XX
RN [2]
RP 1-3333
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT ;
RL Submitted (28-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Physiology and Biotechnology, National Institute of Biology, Vecna
RL Pot 111, Ljubljana 1000, Slovenia
XX
FH Key Location/Qualifiers
FH
FT source 1. .3333
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cv. Volovnik"
FT /isolate="Vol55"
FT /mol_type="genomic RNA"
FT /country="Slovenia"
FT /clone="Vol55c3"
FT /db_xref="taxon:12274"
FT CDS 1. .3333
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B)
FT and coat protein (2C)"
FT /db_xref="GOA:Q09G74"
FT /db_xref="InterPro:IPR005306"
FT /db_xref="UniProtKB/TrEMBL:Q09G74"
FT /protein_id="ABI63937.1"
FT /translation="MGKFYFSNRRLACWAAGKNPHLGGSVEQWLAAISTDPSFRQTVKE
FT DVQVNKLQPTAVRMFSWKVGFGPIDNPEKCDWHFVLTGERPTQPSRPVKADEVVVVPQS
FT KKVMIPSPPPPPTPYFRAVGAFASTRSGFVRATVERLIREREESRAAALFAELPLEYPQ
FT GAPLKLSLAMKFAMLKHTTWRKWYDTSDERLLKAHSGGPCLPPPPPIQSPPSFQERVRE
FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVS
FT ISVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL
FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS
FT AVVVDALEIAINPFGMPGNPTDLTVVATYGHERDMARAFIGSASTFLGNGLARAIFFPG
FT LQYSQEEPRRESIIRLYVASTNATVDTDSILAAISVGTLRQHVGSMHYRTVANTVHQAQ
FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEAKVEIGGGSSIRMVGPLQWESVEEPGQTFS
FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI
FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITTSADPVY
FT TLSVPHWLIHHKLGTLSCEVDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ
FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQ
FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL
FT FKYPGGYVEEDGSFEVKIRSPYHRTPARLLVGQSQRDMSSLNFYVIAGPIAPSGETARL
FT PIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFSDFTSRTCRVSMGE
FT NPFAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQIFALQ
FT KLEGVSELLVGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS
FT FPV"
XX
SQ Sequence 3333 BP; 806 A; 744 C; 887 G; 896 T; 0 other;
dq922673 Length: 3333 31-JUL-2009 Type: N Check: 5410 ..
1 atgggcaaat tttatttttc caacaggcgt ctggcctgtt gggctgctgg
51 aaagaacccc catctagggg gttctgtcga acaatggctg gcggccatta
101 gtactgaccc ctccttccgc caaactgtta aggaggatgt ccaggtaaac
151 aaactgcagc ctacggctgt caggatgttt tcctggaaag tgggattcgg
201 gcccattgac aacccggaaa aatgtgattg gcatttcgtc ctcacgggcg
251 agaggccaac acagccgtcc cggccggtta aagccgatga ggttgtggtg
301 gtgccacaat cgaagaaggt gatgattcca tcgccacctc ctcccccaac
351 tccctacttt agggctgttg gggcttttgc atcaacccgg tccgggtttg
401 ttcgggccac tgtggaaagg ctcatccgtg aacgggaaga gtcgagagct
451 gcggcactct ttgccgaatt gccattggag taccctcagg gtgctccttt
501 gaagttgagc ctggcaatga agtttgccat gctcaaacat accacttgga
551 ggaagtggta tgacactagt gatgagcgcc tcttgaaggc tcattctggt
601 ggtccttgtc ttcctcctcc tcccccaatc caaagtcctc cctcttttca
651 agagagggtt agggaattct gtaggatgaa atcctgtgcc aaggcttttg
701 ccttggaaac ctctctgggt ctcaataagg cctgggtggg tttggtagac
751 atccccagca cctctgtgtg ctgtgcggat ggtagaacta ccggtgggca
801 aacgatagct caagaagctg accctttgca acatagggtc agcatatcag
851 tagcccccgg tagggcacaa tggatctccg agcgcagaca ggctctgcga
901 aggagagagc aagcaaatag cttgcagggt cttgctgctc agactgatat
951 gacttttgag caggccagga acgcctatct tggcgctgct gacatgattg
1001 agcaaggcct accgctactt ccccctctgc gcagcgctta tgcccctagg
1051 ggcttgtgga ggggaccctc aaccagagcc aattacacgc ttgatttcag
1101 gctcaatggt attccgactg ggacaaacac attggaaata ttgtacaatc
1151 ccgtgtcgga agaagagatg gaagagtacc gggacagagg catgtcggct
1201 gtggtggttg atgcgctaga aatagctata aacccgttcg gcatgcctgg
1251 aaatccaacg gacttgactg tcgtggcaac ttatgggcat gaacgtgata
1301 tggcgcgtgc ctttattgga tctgcttcca cattcttagg gaatgggtta
1351 gctagagcca ttttctttcc tggcttgcaa tatagtcagg aggaaccaag
1401 gcgcgaatct ataattcgcc tgtatgttgc ctctactaac gccactgtgg
1451 atactgattc aatcttggcg gccattagtg ttggcacctt gcgtcaacac
1501 gttggctcca tgcactatcg tactgtggca aataccgtgc accaggccca
1551 ggtgcaagga acgacactca gggccactat gatgggtaat actgttgtag
1601 tgtcacctga aggaagccta gtcactggaa cccccgaagc gaaagtcgaa
1651 atagggggcg gttcaagtat taggatggtg ggacctctgc aatgggagag
1701 tgtagaggaa ccagggcaaa ctttctctat cagaagtcgc tcacgttccg
1751 tgaggattga tagaaatgtt gatcttcctc aacttgaggc tgagcccaga
1801 ttgagctcaa ccgtgagggg attggctggt agaggagtga tttatattcc
1851 caaggattgc caggcaaata ggtacttggg caccctgaat atacgtgata
1901 tgatttcaga tttcaaaggt gttcagtacg aaaagtggat aactgcagga
1951 ctagtcatgc ctacctttaa gatagttatt aggctacctg ctaatgcttt
2001 tactggattg acgtgggtga tgagctttga cgcttataac cggataacta
2051 gtaggattac tactagtgca gatcctgtat acaccttgtc agtcccacat
2101 tggcttatcc accataagtt gggtacgctt tcttgtgagg tggactacgg
2151 agagttgtgt ggtcatgcca tgtggttcaa gtccacaact tttgaatctc
2201 cgagactaca ttttacgtgt ctcactggca acaacaaaga gctggcggca
2251 gactggcaag ctgtcgtaga gctatatgct gaattggaag aagctacttc
2301 ttttcttggg aaaccaactt tggtttttga cccaggcgtt tttaatggca
2351 aattccaatt cctgacttgc cctcccatat tctttgatct cacagccgtc
2401 acggctctta agagtgctgg gctgacgttg ggacaagtcc caatggttgg
2451 cactaccaag gtttataatc taaatagcac tcttgtgagt tgtgttctag
2501 gaatgggagg tactattagg ggaagggtgc acatttgtgc gccaatcttc
2551 tatagtatag tgctgtgggt tgtgagtgag tggaacggga ccactatgga
2601 ctggaatgaa cttttcaagt atcccggggg gtatgtggaa gaggacggaa
2651 gttttgaagt taaaattcgc tctccatatc accgaacgcc cgctagattg
2701 cttgttggcc aaagtcagag ggacatgagc tctctgaatt tctatgtaat
2751 agcgggacct atcgctcctt cgggtgagac tgcacgactt cctattgttg
2801 tgcagatcga tgagattgtg cgcccagacc tctctttacc aagttttgaa
2851 gatgattact tcgtgtgggt agacttttct gagtttactc tcgacaagga
2901 agaaattgag attggttctc gtttctctga tttcacttca agaacttgta
2951 gagtgtctat gggcgaaaac ccatttgctg caatgattgc ttgccatgga
3001 ttacatagtg gtgtcctgga cctcaaattt caatggagtc tgaacactga
3051 atttggcaag agtagcggga gcgttaccat aactaaactg gtgggcgata
3101 aagccacggg tctggacggg ccttcacaga tttttgccct acaaaagcta
3151 gagggagttt cagagttgtt ggttgggaat tttgcaggag caaacccaaa
3201 tactcatttt tctctctata gtcgatggat ggcaattaaa ctggatcaag
3251 ctaagagtat taaagtactc cgcgttttat gtaagcctcg tccaggtttt
3301 agtttttatg gaagaaccag tttcccagtc tag