Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TuMV-VN/Bj3 polyprotein gene, partial cds.

ACC No: DQ925462

Dated: 2008-03-06 | Length: 1677 | CRC: -33760962

                
ID   DQ925462; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   DQ925462;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Turnip mosaic virus isolate TuMV-VN/Bj3 polyprotein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1677
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
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RN   [2]
RP   1-1677
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1677
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="Chinese mustard (Brassica juncea)"
FT                   /isolate="TuMV-VN/Bj3"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Laichau"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1254"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP64"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP64"
FT                   /protein_id="ABL09437.1"
FT                   /translation="DNTLMVILAVNYSIKKSGIPGELRNSIIRLFVNGDDLLLSVHPEY
FT                   EYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETA
FT                   LRKLYLDKEPAQEDLTHYLQTIFEDYEDGAEACVYHQAGETLDAGLTDDQKQAEKEKKE
FT                   REKAEKEREKQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC
FT                   IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRDQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .601
FT                   /product="NIb"
FT   mat_peptide     602. .1465
FT                   /product="CP"
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SQ   Sequence 1677 BP; 520 A; 331 C; 435 G; 391 T; 0 other;

dq925462 Length: 1677  06-MAR-2008  Type: N  Check: 3488  ..

       1  agacaacacg ctcatggtca tactggcagt caactattca atcaagaaaa
      51  gtggaattcc aggtgagttg cgtaacagca tcatcagatt atttgtcaac
     101  ggagatgatt tactgctaag cgtacaccca gagtatgagt atatccttga
     151  cactatggca gacaacttcc gcgaactggg cctgaagtat actttcgact
     201  caaggaccag ggaaaaagga gacctttggt ttatgtcgca ccaagggcac
     251  aaaagagagg gaatctggat tcctaagctt gagccagagc gaatagtatc
     301  gattctagaa tgggatcggt cgaaagagcc atgccatcga ctagaggcaa
     351  tctgcgcagc gatgattgag tcgtggggat acgacaagtt gactcacgag
     401  atacgcaagt tttacgcgtg gatgattgaa caagctccat ttagctcctt
     451  agcacaggaa gggaaagctc cttatatagc ggaaacagcg ctgaggaagc
     501  tctaccttga taaggaacca gctcaagagg atctcaccca ttatttgcaa
     551  acaatctttg aggattacga agatggtgct gaggcttgtg tttatcacca
     601  ggcaggtgaa acgcttgatg caggtctgac agacgatcaa aagcaggcgg
     651  agaaggagaa aaaggagaga gagaaggcag aaaaggaacg agagaagcag
     701  aagcagttgg cactcaagaa aggcaaggat gttgcacaag aagagggaaa
     751  acgcgacaag gaagtaaacg ctggaacctc tggaactttt agtgtaccca
     801  gacttaagag tctgacaagc aagatgcgcg tgccaagata cgagcaaaga
     851  gtggctctaa acctcgatca tctaatccta tacacgccgg agcagacgga
     901  tctatctaac acacgttcaa cgcgaaagca gtttgacaca tggtttgaag
     951  gtgtaatggc tgattacgaa ctgacggagg acaaaatgca aattattctc
    1001  aatggtttaa tggtctggtg cattgagaat ggaacctccc cgaacataaa
    1051  cggaatgtgg gtgatgatgg acggcgatga tcaggtggaa ttcccgatca
    1101  agccgctcat tgaccacgcc aaacccacat ttaggcagat aatggcccat
    1151  ttcagtgacg tagctgaagc gtacattgaa aagcgtgacc aagaccgacc
    1201  atacatgcca cgatatggtc ttcagcgcaa tttaaccgac atgagtttag
    1251  ctcgatacgc atttgatttc tatgaaatga cttctagaac tccaatacgt
    1301  gcgagagaag cacacatcca gatgaaagca gcagcactgc gtggcgcaaa
    1351  taacaatttg ttcggcttgg atggaaacgt tggcacaacg gtagagaaca
    1401  cggagaggca tacgaccgag gacgttaatc ggaacatgca taacttactt
    1451  ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag
    1501  tttactcgtt agtattctcg cttacgggaa atatgtaagt ttgttaaagc
    1551  agccagtgtg actttgtcat gtgtgttgtt gttactttct atattttcgc
    1601  cgaacatttt attggtgtta gcgcatgtgg tgaggattgt cctcgattgc
    1651  cttaacattt gataggatgc aagggac