Sequence of DPV Cereal yellow dwarf virus-RPV

Cereal yellow dwarf virus - RPV isolate RPV59P3o02 replicase and coat protein genes, partial cds; and 17k protein gene, complete cds.

ACC No: DQ988087

Dated: 2007-06-15 | Length: 1353 | CRC: 2102543246

                
ID   DQ988087; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
XX
AC   DQ988087;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV59P3o02 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus - RPV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1353
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1353
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1353
FT                   /organism="Cereal yellow dwarf virus - RPV"
FT                   /specific_host="Avena sativa L. (oats)"
FT                   /isolate="RPV59P3o02"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:191217"
FT   CDS             <1. .561
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH00"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH00"
FT                   /protein_id="ABL67545.1"
FT                   /translation="MLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLA
FT                   QRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKV
FT                   EVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVLHEL
FT                   RHDRELCLKLQEWLISDVTAKLN"
FT   CDS             747. .>1353
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH01"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH01"
FT                   /protein_id="ABL67543.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGTARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             772. .1233
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH02"
FT                   /protein_id="ABL67544.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1353 BP; 353 A; 343 C; 326 G; 331 T; 0 other;

dq988087 Length: 1353  15-JUN-2007  Type: N  Check: 6762  ..

       1  atgctcgcgg atgacatgga ggtgagaaat cgcctaacaa tcgactgcaa
      51  cgagctcacc agacacctta gggctgtttg gcttcaaggc atatcaaact
     101  cggttttatg cctgtcggat ggaaccatgt tagctcaacg agtacccggc
     151  gtgcagaaaa gtggctcgta caacacttcg tccacaaact cacgcgtccg
     201  ggtcatggct gcctatcact gtggcgcctc gtgggctatc gctatgggtg
     251  atgatgccct ggaagctcca gatacagact tgtcaaaata taaagatctg
     301  ggcttcaaag tcgaggttag cggagagttg gaattctgtt cgcacatttt
     351  caagacccct aacctcgcca ttccggttaa tgaaaacaaa atgttgtacc
     401  gcttgatcca cgggtacaat ccggaatgtg gcaattttga ggtggttcaa
     451  aactatctca atgcagctgt ctcagtgctg catgagctcc gacatgatcg
     501  ggagctttgc ctaaaacttc aagagtggtt gatttctgac gtcaccgcaa
     551  aactaaactg agcacaaaac tagccggaca aacgtaagtt gcaagtgccg
     601  gaagtcaagt cttacacata agcccaacat tgattttcat ttgttagcgg
     651  gatttgccct tggatttata tcctcaatcc ccatttcagt tgttggtgtt
     701  tatctagtct accttaaggt ttcgacccac attcgtgaaa ttgttaatga
     751  gtacggtcgt ccttagatcc aatggcaatg gttcgcgcag acgcagacag
     801  agagtcgctc ggcgaaggcc tgctgcaaga acgcagccag tggttgtggt
     851  cacttccaac ggcacagcca ggcgcggaag acgccgacga ccagttggtc
     901  ctcggcgagg aagaactcca agatctggag gaggaagccg tggcgagaca
     951  ttcgttttct caaaggattc actcgcgggc aactcctctg gaagtatcac
    1001  cttcgggccg tctctatcag agtatccggc attccagaat ggagtactca
    1051  aggcctacca tgaatataag atcacaaatt gtgtcttaca gttcgtcagc
    1101  gaggcctctt ccacagcagc cggctccatc tcttatgagt tggaccccca
    1151  ttgcaaagca tcttcactcg catcaacgat caataagttc acaatcacca
    1201  aaactggtgc gcggagcttc ccagcgaaga tgatcaacgg gttagagtgg
    1251  cacccttcag acgaagatca attccgtatc ctctataaag ggaacggtgc
    1301  ctcttccgta gctggttctt tcaagattac acttcgtgta cagctacaaa
    1351  acc